PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0174s0038.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 144aa    MW: 16326.7 Da    PI: 11.7058
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0174s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3491.1e-1539139396
                          EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..........EEETTE....EEE-TTHHHHHHHHT--TT- CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliy........rkksgr....yvltkGWkeFvkangLkegD 78 
                           v ++++ +k+g + +p +f++++ ++   +sk+l+l++ +s+++W v ++         +    r    +   + W  F+++n+L++g 
  Kalax.0174s0038.1.p  39 GVALSASGFKRGHVNVPASFCKKFpEL---NSKQLKLRTaSSSKVWAVSCKSylgrrkdgK----RsamqTRVHGAWATFARDNELRVGN 121
                          5566788999999*********99544...46789**996777*******66699744322....3434466679*************** PP

                          EEEEEE-SSSEE..EEEE CS
                   B3  79 fvvFkldgrsefelvvkv 96 
                          ++vF+l++r++ e v+kv
  Kalax.0174s0038.1.p 122 VCVFELVDRNSHEVVFKV 139
                          *****9988777676665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-1830143IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-1531143IPR015300DNA-binding pseudobarrel domain
CDDcd100173.03E-1336143No hitNo description
SMARTSM010195.1E-437141IPR003340B3 DNA binding domain
PfamPF023625.1E-1337139IPR003340B3 DNA binding domain
PROSITE profilePS5086312.09737143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MSTQGRDTKD SQPRRRMQRP DPVAREQANK FNSNRPFFGV ALSASGFKRG HVNVPASFCK  60
KFPELNSKQL KLRTASSSKV WAVSCKSYLG RRKDGKRSAM QTRVHGAWAT FARDNELRVG  120
NVCVFELVDR NSHEVVFKVH IFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-09B3 family protein