PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0174s0039.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 156aa    MW: 17925.7 Da    PI: 7.3044
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0174s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.1e-1714104199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkv+     +  + + +p  f++++ g    ++++ l  ++grsW + + ++ +++r++ ++GWkeF++ n Lk+gDf+vF++ ++s+f
  Kalax.0174s0039.1.p  14 FFKVM--VGDFL-KKMLVPIAFVRRFHGT--FPQEVLLDCPTGRSWWIGV-VKDGPDRMYCQRGWKEFAQGNSLKVGDFLVFRYARNSKF 97 
                          55666..23333.34788********877..6779***************.688888999************************999999 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                             v +++k
  Kalax.0174s0039.1.p  98 --DVEIYEK 104
                          ..7777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.65E-258107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-239107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.14211105IPR003340B3 DNA binding domain
CDDcd100171.96E-1713102No hitNo description
SMARTSM010192.3E-1214105IPR003340B3 DNA binding domain
PfamPF023622.4E-1514103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
PRPARLHNQN CESFFKVMVG DFLKKMLVPI AFVRRFHGTF PQEVLLDCPT GRSWWIGVVK  60
DGPDRMYCQR GWKEFAQGNS LKVGDFLVFR YARNSKFDVE IYEKSGCLKE VSAIFEEPSD  120
RPAMKTEDCS LDEITGNESL MIQALHYICL TLFNM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.18e-17B3 family protein