PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0178s0050.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 420aa    MW: 47522.7 Da    PI: 4.5219
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0178s0050.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.13.1e-1316100899
                          -HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3   8 sdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                           ++++ + l +p  f e++ +g + +++   l++ ++ + W+v +   ++s    + +GW eF++a++Lk+g f+vFk+dg + f  +v+
  Kalax.0178s0050.3.p  16 LHNFAAN-LAIPVAFYEKYlEGRPGCGTRAELRSrLRRQGWKVWM--VGRS----IVDGWAEFADAHELKVGYFLVFKYDGGTVF--HVS 96 
                          4556655.9***********9999**********778899*****..8888....899*********************998888..**9 PP

                          EE-S CS
                   B3  96 vfrk 99 
                          vf+ 
  Kalax.0178s0050.3.p  97 VFDP 100
                          9986 PP
2B351.41.9e-161442241297
                          HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          +   l +p  f+++++++  +s +++++de g+ W vk++ +k++++++  +GW++Fv+ ngL+ gD + F+ ++ +++ +v++++
  Kalax.0178s0050.3.p 144 S---LHFPACFCAANKLNVSCS-EIIVKDEAGKAWPVKVKCKKGGNAVYTMGGWRSFVEGNGLQKGDRFNFRIVS-KGKIPVLSFR 224
                          3...569999*****9998887.****************9999999999999********************765.4444454444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-175107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-155103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.2078101IPR003340B3 DNA binding domain
CDDcd100172.85E-15999No hitNo description
SMARTSM010192.2E-1311101IPR003340B3 DNA binding domain
PfamPF023623.6E-92099IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-17126224IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-15128224IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-14132225No hitNo description
SMARTSM010198.1E-13133227IPR003340B3 DNA binding domain
PfamPF023621.9E-14143224IPR003340B3 DNA binding domain
PROSITE profilePS5086312.407163226IPR003340B3 DNA binding domain
PROSITE profilePS5086310.01338419IPR003340B3 DNA binding domain
CDDcd100173.81E-9338413No hitNo description
SuperFamilySSF1019361.39E-8340413IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.039345418IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.1E-7351413IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MANPSPKIPH FFQPLLHNFA ANLAIPVAFY EKYLEGRPGC GTRAELRSRL RRQGWKVWMV  60
GRSIVDGWAE FADAHELKVG YFLVFKYDGG TVFHVSVFDP SACEVEYGDE HDEDNAVEGD  120
GEELKMDSGQ TSYVGTLRPS YLISLHFPAC FCAANKLNVS CSEIIVKDEA GKAWPVKVKC  180
KKGGNAVYTM GGWRSFVEGN GLQKGDRFNF RIVSKGKIPV LSFRRIGGMR DQTEVATRAK  240
RRKAVEVPKL DTSAGEVEHP SLDEDEDDDV EQDDEEDTVE EDDDEDLLEE DEEEEDMVEE  300
DYDEEEDMVD GDDEEHKTEL DHSRKRMKNR NPDTDESTAS YVGKMCRAYL TSLYFPVYFS  360
RANNLDSCSE IDVKDDRGKL WPVNIRLKRN TNLVYTVGGW TSLIRGNGIR KGDRNRSEA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323329RKRMKNR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.14e-45B3 family protein