PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0178s0070.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 568aa    MW: 63302.1 Da    PI: 5.0299
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0178s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.69.4e-341332242102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++l+ +isw ++g+sfvv+d+ +f++ vLp+ Fkh+nf+SFvRQLn+Y F+k+++++         weF++k F +gkk
  Kalax.0178s0070.1.p 133 FLSKTYDLVDDPALDGIISWGATGESFVVWDPVDFSRVVLPRNFKHNNFSSFVRQLNTYRFRKIDTDK---------WEFANKGFVRGKK 213
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+ks
  Kalax.0178s0070.1.p 214 HLLRSIQRRKS 224
                          *********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.67E-33128222IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-54129222IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-35130222IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-16133156IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-29133222IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-16171183IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340172196IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-16184196IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MIASATNPRI RSQLSVHVDD LTGPEASWPF PSTASEDHYR TPCQHLLHSE LSPPYKPQFT  60
PSSRPLRTLR FADLIFHMGL SGSGSPVEEY EMKPELGGDE VSVVAPLTIG IPAREEGLPQ  120
PLESLQGSPV PPFLSKTYDL VDDPALDGII SWGATGESFV VWDPVDFSRV VLPRNFKHNN  180
FSSFVRQLNT YRFRKIDTDK WEFANKGFVR GKKHLLRSIQ RRKSPQSQQG FNFGVSAEAG  240
RPGLEDELER LRLERKMLMH EVAELQIEQD GTAHHMELVN QRIQAAEKKQ KQMVTFLSKL  300
FHNPAFLARL QSKKEHGQIE SPKVKRKFVT NQPHVAGKSG LDSKNETAKR GVRDQYKLSE  360
LPIMPNSTSI SNPELPGYLL EDMVANMDND GRNIPLRVED ILVAEVPTSV EQAELEGFIT  420
TPEAFGEAFK DSKIRDKGKG KVGSLDSFSP DYLVSFPEDM GMEKAIHGLS TSRTESIPEQ  480
EDDWRSMGFD ANPVMPSPSY GVWDNVADYS MPDFGGSSSF SDVWEFGSPQ AAGCAGLDLG  540
SPDECNFDEL DVRVDHAGDD ISKYMDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-2212822715125Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609890.11e-139PREDICTED: heat stress transcription factor A-3
RefseqXP_021644844.11e-139heat stress transcription factor A-3-like
TrEMBLA0A314XZ371e-139A0A314XZ37_PRUYE; Heat stress transcription factor A-3 isoform X1
STRINGGorai.006G158000.11e-138(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.13e-83heat shock transcription factor A3