PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0178s0089.4.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family E2F/DP
Protein Properties Length: 244aa    MW: 27766.3 Da    PI: 4.691
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0178s0089.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP78.27.7e-251731471
              E2F_TDP 14 lklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71
                         +k++ek+e+ g++t+neva+eLv+e               d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Kalax.0178s0089.4.p  1 MKVCEKVESkGRTTYNEVADELVAEfadpaislapdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 73
                         589****999******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.4E-39178IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023195.6E-22173IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.5E-18174IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.2E-25173IPR003316E2F/DP family, winged-helix DNA-binding domain
PIRSFPIRSF0094042.4E-1081243IPR015648Transcription factor DP
CDDcd144586.49E-4078181IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.3E-4479201No hitNo description
SMARTSM011387.2E-6380241IPR014889Transcription factor DP, C-terminal
PfamPF087813.2E-4281197IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MKVCEKVESK GRTTYNEVAD ELVAEFADPA ISLAPDQQQY DEKNIRRRVY DALNVLMAMD  60
IISKDKKEIQ WKGLPRTTLN DVEELKVERM ALRNKIEKKA AYLQELEEQY VGLQNLIQRN  120
EQLFSSENAP SQGVQLPFIL VQTRPHATVE VEISEDMQLV HFDFNSTPFE LHDDNYVLKA  180
MNFCQRSQID ACDAENNFPI DAGEGCSITN VYQPEIQQQP SRSSTPGRPP TPGIIKARVK  240
PEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B9e-321751790PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022942389.11e-143transcription factor-like protein DPB isoform X1
RefseqXP_023536263.11e-143transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-114DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1Q3BPJ41e-140A0A1Q3BPJ4_CEPFO; E2F_TDP domain-containing protein/DP domain-containing protein
TrEMBLA0A1S3C2421e-140A0A1S3C242_CUCME; transcription factor-like protein DPB isoform X2
STRINGXP_004137174.11e-140(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-117Transcription factor DP