PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0179s0023.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 445aa    MW: 47532.6 Da    PI: 7.215
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0179s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-055779123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+k F r  nL+ H r H
  Kalax.0179s0023.1.p 57 FVCEICNKGFQRDQNLQLHRRGH 79
                         89*******************88 PP
2zf-C2H210.70.0016134155223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          kC++C+k +  +s+ k H + +
  Kalax.0179s0023.1.p 134 KCEKCSKKYAVQSDWKAHSKIC 155
                          7*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-55679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.05E-65679No hitNo description
PROSITE profilePS5015710.9495779IPR007087Zinc finger, C2H2
PfamPF121716.9E-55779IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SuperFamilySSF576677.05E-6128153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MPGVATAASA EEASVSSSGT QAAQAAVKRK RSLPGMPDLD AEVVALSPKT LMATNRFVCE  60
ICNKGFQRDQ NLQLHRRGHN LPWKLRQRIS KEVRKKVYVC PQTSCVHHDR TRALGDLTGI  120
KKHFCRKHGE KKRKCEKCSK KYAVQSDWKA HSKICGTKER DSFITHRAFC DLLTDDRIRA  180
ARTQSLDKNV ADILNPDDNA GPEVEIPAVV PPSSPSAAPA LDSAADVIGS VFPIQDSELI  240
WEASETPEQV LEDAQPSTAT CITVGAHQQN EFYLFAPSCS TSSVQNQTPG FANFIWDVAT  300
PDGITKLAPS LHTEPISLCL STNNSSSIFR QTGEEPQSSA PKPVMSATAL LQKAAQMGSS  360
LSGSSLLQNT SFQSSLGLGL QYDESSRFNE LMMGNTSLFE PKPTTSDFLG LGMVAGGGST  420
GGLSALLTSM EGGPDVAAAA ASYG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-20129189371Zinc finger protein JACKDAW
5b3h_F6e-20129189371Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18395KLRQRISKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271958.21e-156PREDICTED: protein indeterminate-domain 2
SwissprotQ9LVQ71e-129IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLF6GWY31e-154F6GWY3_VITVI; Uncharacterized protein
STRINGVIT_04s0023g01430.t011e-155(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-104C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]