PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0181s0015.4.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-other

Protein Properties

Length: 266aa MW: 29580 Da PI: 6.0565

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0181s0015.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.2	3.7e-20	24	79	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 rkR t+ qle+Lee++e ++yp+++++ +A+k+gLte+qV+ WF+ rR k+k+ Kalax.0181s0015.4.p 24 RKRKLKTPAQLEALEEYYEDHKYPTESMKSAIAEKIGLTEKQVSGWFCHRRLKDKR 79 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.8E-21	10	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.27E-18	19	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.601	20	80	IPR001356	Homeobox domain
SMART	SM00389	5.5E-20	22	84	IPR001356	Homeobox domain
CDD	cd00086	2.15E-18	24	79	No hit	No description
Pfam	PF00046	1.6E-17	24	79	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MEDCNVDSLD AHTEEDKTPV ETNRKRKLKT PAQLEALEEY YEDHKYPTES MKSAIAEKIG 60 LTEKQVSGWF CHRRLKDKRI SKDEALGNGR MDRSSGVIQE HCSGPGQDSC GSTKPGEYKP 120 ADLREVESQW LAGEELSPKN LSHHNRLNTA SLEVDMDDTS SESSLPLRPS HMPQRDAPQM 180 WENSRYLIQN GDAVPSNPKV AIGAQLRRPS GYLKIKPKAE HPAIAAVKRQ LGNSFREDGP 240 PIGIEFHPLP IDAFQEAPKD TTTGL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024199697.1	7e-85	uncharacterized protein LOC112202888
TrEMBL	A0A2P6QF75	2e-83	A0A2P6QF75_ROSCH; Putative transcription factor Homobox-WOX family
STRING	EMJ15077	3e-82	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	7e-62	HB-other family protein

Link Out ? help Back to Top
Phytozome	Kalax.0181s0015.4.p