PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0181s0046.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 409aa MW: 45608.4 Da PI: 7.149

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0181s0046.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154.2	5.8e-48	22	146	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 pGfrF+Ptd+el+++yL++k+eg + ++ evi+evdi+++ePwdLp k+v ++++ew+fFs+r +ky++g +++r+t+ gyWkatgk+++ Kalax.0181s0046.1.p 22 PGFRFSPTDDELISYYLRQKMEGFEKSV-EVIPEVDICRHEPWDLPgKSVIQSDSEWFFFSPRGRKYPNGCQSKRTTEFGYWKATGKERN 110 9**********************999.99***********777777899******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s + +++g+k++Lvf+ grapkg++t+W+mhey + Kalax.0181s0046.1.p 111 VKS-NANVIGTKRILVFHLGRAPKGRRTEWIMHEYCM 146 .999***************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-54	15	161	IPR003441	NAC domain
PROSITE profile	PS51005	52.365	20	162	IPR003441	NAC domain
Pfam	PF02365	3.3E-24	22	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MGDISSSGEA QMSLVAASAR FPGFRFSPTD DELISYYLRQ KMEGFEKSVE VIPEVDICRH 60 EPWDLPGKSV IQSDSEWFFF SPRGRKYPNG CQSKRTTEFG YWKATGKERN VKSNANVIGT 120 KRILVFHLGR APKGRRTEWI MHEYCMHGSS QDSLVVCRLR KNSDFCMSGS SHQDSAIQGR 180 GLSMTSDNMN QAGFADVRSH PDGHMVGDGC LVVSDGERVD DGSSRKCNSS HDSYSIEQNG 240 DGFESDRKAP HEVSQPTSSS CHKDCNNDDF YAEILNDDIV KLFDESSLTT SPNHHPLVST 300 IFDSRTEQLP VTTATSSMGP KQGIARRRIR FDMTKLDIDE LEMHLNPPER PCAVRKFTAG 360 KLSGKLTLIL LIVATLLALC LWYPVTEMKH TACASLCKDP RARSVKSW*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MGDISSSGEA QMSLVAASAR FPGFRFSPTD DELISYYLRQ KMEGFEKSVE VIPEVDICRH  60
EPWDLPGKSV IQSDSEWFFF SPRGRKYPNG CQSKRTTEFG YWKATGKERN VKSNANVIGT  120
KRILVFHLGR APKGRRTEWI MHEYCMHGSS QDSLVVCRLR KNSDFCMSGS SHQDSAIQGR  180
GLSMTSDNMN QAGFADVRSH PDGHMVGDGC LVVSDGERVD DGSSRKCNSS HDSYSIEQNG  240
DGFESDRKAP HEVSQPTSSS CHKDCNNDDF YAEILNDDIV KLFDESSLTT SPNHHPLVST  300
IFDSRTEQLP VTTATSSMGP KQGIARRRIR FDMTKLDIDE LEMHLNPPER PCAVRKFTAG  360
KLSGKLTLIL LIVATLLALC LWYPVTEMKH TACASLCKDP RARSVKSW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-42	22	162	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-42	22	162	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-42	22	162	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-42	22	162	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-42	22	162	22	168	NAC domain-containing protein 19
3swm_B	2e-42	22	162	22	168	NAC domain-containing protein 19
3swm_C	2e-42	22	162	22	168	NAC domain-containing protein 19
3swm_D	2e-42	22	162	22	168	NAC domain-containing protein 19
3swp_A	2e-42	22	162	22	168	NAC domain-containing protein 19
3swp_B	2e-42	22	162	22	168	NAC domain-containing protein 19
3swp_C	2e-42	22	162	22	168	NAC domain-containing protein 19
3swp_D	2e-42	22	162	22	168	NAC domain-containing protein 19
4dul_A	2e-42	22	162	19	165	NAC domain-containing protein 19
4dul_B	2e-42	22	162	19	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015872645.1	1e-119	NAC domain-containing protein 40-like
TrEMBL	A0A2P5DZX9	1e-114	A0A2P5DZX9_PARAD; NAC domain containing protein
STRING	Gorai.006G113700.1	1e-110	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27300.1	1e-85	NTM1-like 8

Link Out ? help Back to Top
Phytozome	Kalax.0181s0046.1.p