PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0181s0054.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 416aa MW: 46063.7 Da PI: 9.0366

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0181s0054.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	1e-10	139	181	4	46
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k rr+++NReAAr+sR+RKka++++Le +L++ ++L+ Kalax.0181s0054.2.p 139 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQDLQ 181 5889*************************98888887777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-6	136	212	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.197	138	182	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.6E-8	139	181	IPR004827	Basic-leucine zipper domain
CDD	cd14708	2.71E-21	140	191	No hit	No description
SuperFamily	SSF57959	4.1E-7	140	183	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.2E-8	141	185	No hit	No description
PROSITE pattern	PS00036	0	143	158	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.0E-31	220	295	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MFPAWPMRFQ QAQQRGSSRS GGDYCTDSGS ALNTLSSKGG GGDQARFDQE SPISKKPSSS 60 SVEHHRQQQQ HQQLQQQQHQ QAVVGDMMTG DHDNSTRTGV ATTAEPGGYQ NQQPSSSSAR 120 LISEKKKGVG STSERILDAK TLRRLAQNRE AARKSRLRKK AYVQQLESSR IKLSQLEQDL 180 QRTRSQGYFL GAGGAGASIS SGAAMFDMEY ARWLDDDLRH MADLRTALQA HLSEGDLQVI 240 IDDHLSHYDE IFQLKAVAAK TDVFHLITGM WATPAERCFL WMGGFRPSEL IKIVIPQADP 300 LTEQQVLGIY SLQHSSQQAE EALSQGLDQL QQSLVDTIAG GPVVMDGMHQ MATALGKLSN 360 LEGFVRQADN LRQQTLHQLR RILTVRQAAR CFLAIGEYYG RLRALSSLWA SRPRE*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MFPAWPMRFQ QAQQRGSSRS GGDYCTDSGS ALNTLSSKGG GGDQARFDQE SPISKKPSSS  60
SVEHHRQQQQ HQQLQQQQHQ QAVVGDMMTG DHDNSTRTGV ATTAEPGGYQ NQQPSSSSAR  120
LISEKKKGVG STSERILDAK TLRRLAQNRE AARKSRLRKK AYVQQLESSR IKLSQLEQDL  180
QRTRSQGYFL GAGGAGASIS SGAAMFDMEY ARWLDDDLRH MADLRTALQA HLSEGDLQVI  240
IDDHLSHYDE IFQLKAVAAK TDVFHLITGM WATPAERCFL WMGGFRPSEL IKIVIPQADP  300
LTEQQVLGIY SLQHSSQQAE EALSQGLDQL QQSLVDTIAG GPVVMDGMHQ MATALGKLSN  360
LEGFVRQADN LRQQTLHQLR RILTVRQAAR CFLAIGEYYG RLRALSSLWA SRPRE*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015872803.1	0.0	transcription factor TGA9 isoform X2
Refseq	XP_024926308.1	0.0	transcription factor TGA9 isoform X2
Swissprot	Q93XM6	1e-164	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1Q3D847	0.0	A0A1Q3D847_CEPFO; BZIP_1 domain-containing protein/DOG1 domain-containing protein
STRING	cassava4.1_006304m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-149	bZIP family protein

Link Out ? help Back to Top
Phytozome	Kalax.0181s0054.2.p

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]