PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0181s0078.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 214aa    MW: 22785.4 Da    PI: 7.7497
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0181s0078.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013151173123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cg  Fs+   L  H+r+H
  Kalax.0181s0078.1.p 151 HQCSVCGSEFSSGQALGGHMRRH 173
                          79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.45284111IPR007087Zinc finger, C2H2
SuperFamilySSF576671.5E-884106No hitNo description
SMARTSM003550.484106IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-684106IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SuperFamilySSF576671.5E-8146173No hitNo description
Gene3DG3DSA:3.30.160.606.2E-4149173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.0E-11150175IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723151173IPR007087Zinc finger, C2H2
SMARTSM003550.012151173IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280153173IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MELPEHEATA VAAPVHQEPL TLSIDRGNRA NRPSRVSSDE EERRSCDSVV TEEEQDLANC  60
LILLARAELV RGGKRKLADL GGCHECKACN KTFPSFQGLY GHRAGHGKPR SEINDCDAEK  120
QLSTSLQLST TNSRNGNVSS VKASALSNRV HQCSVCGSEF SSGQALGGHM RRHRAVPAPV  180
RSPCTGVSSP ATSMGENTPV FSAHAHALLG CHH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933179.14e-32zinc finger protein ZAT5
SwissprotQ681X48e-27ZAT5_ARATH; Zinc finger protein ZAT5
STRINGXP_008807698.14e-30(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.17e-29C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]