PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0182s0056.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-other

Protein Properties

Length: 545aa MW: 60702.6 Da PI: 8.3847

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0182s0056.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.1	4.1e-20	31	86	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 rkR t+ ql++Lee++e ++yp+ ++r +A+k+gLte+qV+ WF+ rR k+k+ Kalax.0182s0056.1.p 31 RKRKLKTPAQLQALEEYYEDHKYPTDSMRSAIAEKIGLTEKQVSGWFCHRRLKDKR 86 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-20	12	86	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.5E-17	26	91	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.665	27	87	IPR001356	Homeobox domain
SMART	SM00389	1.1E-20	29	91	IPR001356	Homeobox domain
CDD	cd00086	6.19E-18	31	86	No hit	No description
Pfam	PF00046	1.4E-17	31	86	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence Send to blast
MDKVVYLLPD SDADSLDGRA EEDKTPVETS RKRKLKTPAQ LQALEEYYED HKYPTDSMRS 60 AIAEKIGLTE KQVSGWFCHR RLKDKRLSKD ETLGSGRMER SSGVIQEHFS GPGQDSCGST 120 KPGEYKNADM RDVESQLLAG QELSPMKLAY HNRMNTGSLD VDMDDTSSES SSPLRPSHLP 180 QRDVPQMWEN LRYSIPKGPA VPSNPKVAIG GQFRWPSGYL KIKPKAEHPA ITAVKRQLGM 240 NFRVDGPPLG IEFQSPPVDA FQAGPKDTAT GPRDGIGSLV PNISGSSYHG AQFRRKMHDG 300 SFKPDHSYLK EEGPRVNHGS ELFYSHHQSR PKYSVSDNIK LDHGWGPSPN LDKEYAEEAY 360 GSKRNLFNEE KYGSKGLRIQ PISSVPFQPS HNISGVNPMI AQRSKYLKNK LSNTKSRQRE 420 PHNTFERRLC AREPEIEKHH SVSSNTSERP NLIPVTATPE YKLMDKQLVA ARNDPVEYPN 480 PNSEQIGVYN NELKEKKARF GYSQPDFGKT MSLAINRGKG AAGAIPSSFS EDETGETSSS 540 GDDE*

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence Send to blast

MDKVVYLLPD SDADSLDGRA EEDKTPVETS RKRKLKTPAQ LQALEEYYED HKYPTDSMRS  60
AIAEKIGLTE KQVSGWFCHR RLKDKRLSKD ETLGSGRMER SSGVIQEHFS GPGQDSCGST  120
KPGEYKNADM RDVESQLLAG QELSPMKLAY HNRMNTGSLD VDMDDTSSES SSPLRPSHLP  180
QRDVPQMWEN LRYSIPKGPA VPSNPKVAIG GQFRWPSGYL KIKPKAEHPA ITAVKRQLGM  240
NFRVDGPPLG IEFQSPPVDA FQAGPKDTAT GPRDGIGSLV PNISGSSYHG AQFRRKMHDG  300
SFKPDHSYLK EEGPRVNHGS ELFYSHHQSR PKYSVSDNIK LDHGWGPSPN LDKEYAEEAY  360
GSKRNLFNEE KYGSKGLRIQ PISSVPFQPS HNISGVNPMI AQRSKYLKNK LSNTKSRQRE  420
PHNTFERRLC AREPEIEKHH SVSSNTSERP NLIPVTATPE YKLMDKQLVA ARNDPVEYPN  480
PNSEQIGVYN NELKEKKARF GYSQPDFGKT MSLAINRGKG AAGAIPSSFS EDETGETSSS  540
GDDE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	2e-53	HB-other family protein

Link Out ? help Back to Top
Phytozome	Kalax.0182s0056.1.p