PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0185s0040.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 381aa MW: 41221.2 Da PI: 8.3839

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0185s0040.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.8	6e-11	313	358	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++L +Av++Ik Lq Kalax.0185s0040.1.p 313 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 358 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.024	307	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-14	310	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.39E-11	311	362	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-13	312	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-8	313	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-13	313	363	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MFPSSNSSSQ SQQSMAGSSL IRNGSAPGSV LNRAVDSVLN SSNNNSSSNN NADSHHDFSP 60 FLSPPNFNLP QHHQPAYHQY FSADSSSISS DSNCKVNNLN HHPASDPKHS DSKRLQRSGT 120 GLNDFNIDDF SIAANLKIGE GGGSSSSSPA LVRHSSSPAG FLNQLTADLG GFSVPRGSGN 180 YSRGSSSNGP GTSRLKPQLS FTRQDSNMSQ LSGITENIID GLNQNSGHRE AHNYTYANDA 240 WDSGASITFS GPPSKRNKNE EEYLNCFSGL EHQFSLPQTT LEMATVEKLL QIPEDSVPCK 300 IRAKRGFATH PRSIAERERR TRISGKLKKL QDLVPNMDKQ TSYADMLDLA VQHIKGLQNQ 360 VQKLNKDMEN CTCGCKRSTS *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MFPSSNSSSQ SQQSMAGSSL IRNGSAPGSV LNRAVDSVLN SSNNNSSSNN NADSHHDFSP  60
FLSPPNFNLP QHHQPAYHQY FSADSSSISS DSNCKVNNLN HHPASDPKHS DSKRLQRSGT  120
GLNDFNIDDF SIAANLKIGE GGGSSSSSPA LVRHSSSPAG FLNQLTADLG GFSVPRGSGN  180
YSRGSSSNGP GTSRLKPQLS FTRQDSNMSQ LSGITENIID GLNQNSGHRE AHNYTYANDA  240
WDSGASITFS GPPSKRNKNE EEYLNCFSGL EHQFSLPQTT LEMATVEKLL QIPEDSVPCK  300
IRAKRGFATH PRSIAERERR TRISGKLKKL QDLVPNMDKQ TSYADMLDLA VQHIKGLQNQ  360
VQKLNKDMEN CTCGCKRSTS *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010650469.1	1e-125	PREDICTED: transcription factor bHLH128 isoform X2
Swissprot	Q8H102	2e-77	BH128_ARATH; Transcription factor bHLH128
TrEMBL	F6I3R9	1e-123	F6I3R9_VITVI; Uncharacterized protein
STRING	VIT_05s0124g00240.t01	1e-124	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43140.2	1e-68	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0185s0040.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]