PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0186s0035.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 436aa    MW: 49387 Da    PI: 6.957
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0186s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.31.3e-25108209186
             trihelix   1 rWtkqevlaLiearremeerlrrgk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tse 74 
                          +Wt+ +v++Li a+ +++++ +++                +kk++W++vs++m+e+gf++sp+qC++k+++lnkryk+++e+ +k+ +++
  Kalax.0186s0035.1.p 108 KWTDGMVRLLIMAVYYIGDECGSEGggeagagkkkagalmQKKGKWKSVSRAMMEKGFHVSPQQCEDKFNDLNKRYKRVNEILGKGtACR 197
                          7**************9999999754455677788899999**********************************************55** PP

             trihelix  75 ssstcpyfdqle 86 
                          ++++ +++dq++
  Kalax.0186s0035.1.p 198 VVENQSLLDQMD 209
                          ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819957.32E-52672No hitNo description
PfamPF138371.4E-21106235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MEGNGLRGGI FSNLSPGILG LEMPIQQQQQ QQPPPQPQPP QQRPQNPHHF HPQMVAFARP  60
ETDHSSQMKQ PGYPYAANPR QLSDDEEGGT EENAADGKRK GSPWQRMKWT DGMVRLLIMA  120
VYYIGDECGS EGGGEAGAGK KKAGALMQKK GKWKSVSRAM MEKGFHVSPQ QCEDKFNDLN  180
KRYKRVNEIL GKGTACRVVE NQSLLDQMDH LTPKSKEEAR KLLNSKHLFF REMCAYHNSC  240
GGGAGHHSPE QALAPRNSSE TLQIHHSNNS HNHSEGEGDD EDSENEEDDD SQNEEEEGEV  300
RCSTKRRTEG ETGLRGLEGE VGAVMSDGGR SGWEKREWLK RRMVRVEEER VGQEMEAFEI  360
EKERLKWAKY SSKKEREMER KRLRNERAKL ENDRMVLLLK HKELQIMSHF SQQQQQQQQM  420
GACNNKRADP SSVTG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908803.11e-148KNR4/SMI1 homolog isoform X1
RefseqXP_021908804.11e-148KNR4/SMI1 homolog isoform X1
TrEMBLA0A2P5WQP11e-146A0A2P5WQP1_GOSBA; Uncharacterized protein
STRINGevm.model.supercontig_5.1041e-148(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.13e-77sequence-specific DNA binding transcription factors