PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0187s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 260aa    MW: 28406.4 Da    PI: 5.7388
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0187s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.8e-19121170255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                          gy+GVr+++ +g+W+AeIrdp     +   r++lg+f  ae+Aa+a+++a+ k++g
  Kalax.0187s0013.1.p 121 GYRGVRQRP-WGKWAAEIRDP-----HraVRVWLGTFNNAEDAARAYDRAAFKFRG 170
                          8********.**********7.....338*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.3E-38121184IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23121179IPR016177DNA-binding domain
PROSITE profilePS5103224.671121178IPR001471AP2/ERF domain
PfamPF008472.2E-12121170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-31121178IPR001471AP2/ERF domain
PRINTSPR003675.0E-11122133IPR001471AP2/ERF domain
CDDcd000187.38E-21122178No hitNo description
PRINTSPR003675.0E-11144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
METSFTAGQS PSFRLTSDQE VAAMVAALTT VVTGGGSHQP LPHAATTSYS HDSESASSVW  60
SIESESDTCR FCQLRDCLGC NLFAPNLEAR EPLKGGKNRA AAATGARKMK KRSDQSGMMR  120
GYRGVRQRPW GKWAAEIRDP HRAVRVWLGT FNNAEDAARA YDRAAFKFRG PRAKLNFPFE  180
DYSSAAEQSS SDSAPQADQC EPSDRTTDQS LDFDLAGGFG APGMWDFRGN DEVMRQWMMS  240
METGTGEYSD SASVIFQSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-23122179664ATERF1
3gcc_A4e-23122179664ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.16e-27redox responsive transcription factor 1