PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0187s0027.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 461aa    MW: 50089.2 Da    PI: 8.0854
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0187s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.22e-15288333555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  Kalax.0187s0027.1.p 288 HNQSERKRRDKINQRMKTLQKLVPNS-----NKTDKASMLDEVIDYLKQLQ 333
                          9************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.33E-19281345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.695283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-17288342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-13288333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.18E-16288336No hitNo description
SMARTSM003532.3E-17289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MSQCVPSWDN NPHNDTYSHT LHPHPPPAPA KQLVHSRNLD SGIVPSSAPE VPAMLDYEVA  60
ELTWENGQLA LHGLGQPRTS GAWQDKHQPG SGTLESIVNQ ATCCFFNPND KSSFDHRAPT  120
ASAALVMDAL VPLCSNTNNN NCNCNHNNNN GNNPDEDSNA GGTVGRARTH VGSCSAGMKR  180
TRQGVRQVPV VGQDWSARSE YSANSSRQQQ VTVDTCTERD QGTTAFTSTS VWSAENTSSG  240
MPCTRLTGDD HDSICHSRSI MKNERGSGEN KKQKASNSAK RSRAAAIHNQ SERKRRDKIN  300
QRMKTLQKLV PNSNKTDKAS MLDEVIDYLK QLQAQVNMMN RMNMPQMAMM PMALNQQAAL  360
QMTMMAQMGM GGMLDMNTAA AMAAGRASMQ PILHPSAAAA AFMPMPPASW DAAAQAMMSD  420
PMSAFLACQQ SQPMTMDAYR MMASLYQHMQ QAQQAPNSKS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291296ERKRRD
2292297RKRRDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017451.11e-111PREDICTED: transcription factor UNE10-like
TrEMBLU5GLG21e-109U5GLG2_POPTR; BHLH family protein
STRINGPOPTR_0002s14430.11e-109(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.15e-58bHLH family protein