PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0187s0027.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 335aa MW: 36476.2 Da PI: 9.3615

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0187s0027.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.8	1.2e-15	162	207	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L ++++Y+k+Lq Kalax.0187s0027.2.p 162 HNQSERKRRDKINQRMKTLQKLVPNS-----NKTDKASMLDEVIDYLKQLQ 207 9**********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.45E-19	155	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.695	157	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.39E-15	162	210	No hit	No description
Pfam	PF00010	3.5E-13	162	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-18	162	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-17	163	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0009506	Cellular Component	plasmodesma
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MDALVPLCSN TNNNNCNCNH NNNNGNNPDE DSNAGGTVGR ARTHVGSCSA GMKRTRQGVR 60 QVPVVGQDWS ARSEYSANSS RQQQVTVDTC TERDQGTTAF TSTSVWSAEN TSSGMPCTRL 120 TGDDHDSICH SRSIMKNERG SGENKKQKAS NSAKRSRAAA IHNQSERKRR DKINQRMKTL 180 QKLVPNSNKT DKASMLDEVI DYLKQLQAQV NMMNRMNMPQ MAMMPMALNQ QAALQMTMMA 240 QMGMGGMLDM NTAAAMAAGR ASMQPILHPS AAAAAFMPMP PASWDAAAQA MMSDPMSAFL 300 ACQQSQPMTM DAYRMMASLY QHMQQAQQAP NSKS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	170	ERKRRD
2	166	171	RKRRDK

Functional Description ? help Back to Top
Source	Description
UniProt	Required during the fertilization of ovules by pollen. {ECO:0000269\|PubMed:15634699}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00034	PBM	Transfer from AT4G00050	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011017451.1	1e-84	PREDICTED: transcription factor UNE10-like
Swissprot	Q8GZ38	2e-62	UNE10_ARATH; Transcription factor UNE10
TrEMBL	U5GLG2	7e-82	U5GLG2_POPTR; BHLH family protein
STRING	POPTR_0002s14430.1	1e-82	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	9e-35	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0187s0027.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]