PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0187s0047.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 422aa    MW: 45722.7 Da    PI: 9.7987
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0187s0047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-165599147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r +WT+eE++++++a k++G   W+ I +++g ++t+ q++s+ qk+
  Kalax.0187s0047.1.p 55 REKWTEEEHQKFIEALKLYGRA-WRQIEEYIG-TKTAVQIRSHAQKF 99
                         789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.42E-1549105IPR009057Homeodomain-like
PROSITE profilePS5129421.44750104IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-952106IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-1653102IPR006447Myb domain, plants
SMARTSM007172.9E-1354102IPR001005SANT/Myb domain
PfamPF002495.7E-145598IPR001005SANT/Myb domain
CDDcd001671.91E-1057100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MAPLQIPTAG SKSPVTSIAS GNNSQNILNA NCETDLDGSG VALKVRKPYT ISKQREKWTE  60
EEHQKFIEAL KLYGRAWRQI EEYIGTKTAV QIRSHAQKFF SKVTKESASS AEAPTEAIDI  120
PPPRPKRKPL HPYPRKFVEA PNKTRQGPSL KENGSSTISK NLERGALSPT SVLSPEVAHM  180
STSHAKAQGS GCVSATSSGS RSSSVLEKSN PNKNNSTPIK EKDLLRTLNL SGPSSHDSTS  240
VQTRKEFKYI ELTKDEDVYS EAETKFFGGV SPLKTIKLFG QTVVVTKPPD LSLDMKNVVM  300
PTATRGPLMC CVSHMDSLVG SQPYDSSPDG QLVTGGILMG ERSREKGGSK GFSVNGSISD  360
AISKAYNAER NQDTVDSKIR SSEGPILSPS EGRKGFVPYK RCVSEREAVL QMNKADCRVC  420
L*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.12e-33MYB_related family protein