PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0189s0039.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 240aa    MW: 25963.6 Da    PI: 5.8173
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0189s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.31.7e-121549842
                         HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
               SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                          r++t+ kR+++++KK  E+ +LC++++ +ii+s 
  Kalax.0189s0039.1.p 15 GRKITYRKRKETLMKKLDEITTLCGVNAGLIIYSD 49
                         599******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.638149IPR002100Transcription factor, MADS-box
CDDcd002667.06E-17177No hitNo description
SMARTSM004325.4E-8163IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-14288IPR002100Transcription factor, MADS-box
PfamPF003191.1E-111549IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MKSKVVMDLV EDLGGRKITY RKRKETLMKK LDEITTLCGV NAGLIIYSDF EEGGGPLTWP  60
ANPEQVQGVV AQFKSMRWVD LGRKKVEDVE SLVEGRLAKE KLKLAKMQVE NEDKRTRQLL  120
SESLAGRNVT AFSTLDLNGL NWLINEKLKC LRMRMSHLRT EAENSIPVAD NFVLPNPGLH  180
LNSDVTLWDG SAANHGVDMM GAGSNIAAAP ALSGNGVEDQ AGPSGEKDQG GNGADGCAQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.12e-25AGAMOUS-like 38