PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0192s0053.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CPP
Protein Properties Length: 565aa    MW: 61402.9 Da    PI: 7.5691
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0192s0053.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.23.8e-1486125242
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                          ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C++C N+ e+
  Kalax.0192s0053.1.p  86 RQKQCNCKHSRCLKLYCECFASGIYCDG-CNCNNCYNNVEN 125
                          689*************************.********9875 PP
2TCR512.8e-16170209140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeCf+a   Cs++CkC dCkN e
  Kalax.0192s0053.1.p 170 KHNKGCHCKKSGCLKKYCECFQADILCSDNCKCMDCKNYE 209
                          589***********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.3E-1585125IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.10886210IPR005172CRC domain
PfamPF036387.1E-1187122IPR005172CRC domain
SMARTSM011141.0E-19170211IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12173208IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MEQGGDAPAP SDSSTSTASD APSRKFSRQL DFTSPASISS VSVQQLQVPT HTSAGMNPQT  60
MQSVKPESPI SRQRPNVEVK DGTPKRQKQC NCKHSRCLKL YCECFASGIY CDGCNCNNCY  120
NNVENDAARR EAVEATLERN PNAFRPKIAN SPHGKRNVRV EVGDTVSLAK HNKGCHCKKS  180
GCLKKYCECF QADILCSDNC KCMDCKNYEG SEERQALFHG DHANNIVYMQ QAANAAITGA  240
IGSSGFGSPP FSKKRKGQEP LGPASKELHR LAQLQPANSV NSPPPFASMS SVPVTHSSSP  300
AVASAQSKLT YRSLLADLIQ PQDLTALCSV LVAMTAETAE TFADQKNTSD RPVEEDQIEA  360
EPSLASTTQD FVNSRKEAQH PKLPLDDNSN GIQVACDLRK DECCSDGTEL PNVRPMSPGT  420
LALMCDEQDT SFMEAVSSST IIHRGVRTTS QLPDGVGRLD LYMEQERIAL TILRDCLTRL  480
ITFGEIKETR CSSLAKNVSE CQKNGTRSEA ESRQRVFSNG SNTRVLIQPA TRMSCQVTKS  540
PSIASNLINQ HLRGSLPDRR VSDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-30782192132Protein lin-54 homolog
5fd3_B1e-30782192132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280793.10.0PREDICTED: protein tesmin/TSO1-like CXC 5
RefseqXP_010656305.10.0PREDICTED: protein tesmin/TSO1-like CXC 5
RefseqXP_010656307.10.0PREDICTED: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-164TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A1Q3CDW50.0A0A1Q3CDW5_CEPFO; CXC domain-containing protein
STRINGVIT_11s0016g03680.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-146Tesmin/TSO1-like CXC domain-containing protein