PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0193s0001.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-other

Protein Properties

Length: 210aa MW: 22745.8 Da PI: 5.4292

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0193s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.8	1.9e-18	21	77	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR t+ qle Le+ ++ + yps++ r++L+ klgL++rq ++WF+ rR k+kk Kalax.0193s0001.1.p 21 KSKRKMKTAFQLELLEKTYAVETYPSEAVRADLSVKLGLSDRQLQMWFCHRRLKDKK 77 679****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-17	7	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.58E-16	13	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.904	18	78	IPR001356	Homeobox domain
SMART	SM00389	2.5E-14	20	82	IPR001356	Homeobox domain
Pfam	PF00046	5.7E-16	21	77	IPR001356	Homeobox domain
CDD	cd00086	1.04E-15	21	78	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MEEVIEEKKE QMSTPQDGDS KSKRKMKTAF QLELLEKTYA VETYPSEAVR ADLSVKLGLS 60 DRQLQMWFCH RRLKDKKTPA LTTKRQKKDS PGEGAAGTSY SGVGDELAAS SEAGGEHFPV 120 IGLGSGATTF GHGRAVPRNC GVALARIGSD LPPVKRYYET PEAVREMRAI AFVEAQLGEP 180 LREDGPILGM DFDPLPPDAF GAPLGDLCF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021632678.1	4e-71	homeobox-DDT domain protein RLT2 isoform X1
Refseq	XP_021632679.1	4e-71	homeobox-DDT domain protein RLT2 isoform X2
Swissprot	Q9FFH1	7e-45	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A5AVE7	2e-73	A5AVE7_VITVI; Uncharacterized protein
TrEMBL	F6H5H1	8e-76	F6H5H1_VITVI; Uncharacterized protein
STRING	VIT_12s0028g03080.t01	1e-76	(Vitis vinifera)
STRING	cassava4.1_033420m	2e-70	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	3e-47	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Kalax.0193s0001.1.p