PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0196s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 319aa    MW: 35103.5 Da    PI: 8.2268
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0196s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.7e-09263304443
                          S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                          W++ Ed+ l++a k ++++   +W++Ia+ ++ gR+ k c  r
  Kalax.0196s0002.1.p 263 WSPGEDKALLNALKAFPKDttmRWEKIAAAVP-GRSKKACMKR 304
                          ********************************.*******887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.937161202IPR017877Myb-like domain
SMARTSM007170.049165218IPR001005SANT/Myb domain
SuperFamilySSF466892.77E-5167206IPR009057Homeodomain-like
PROSITE profilePS500907.596255309IPR017877Myb-like domain
SMARTSM007171.8E-4259311IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-8259304IPR009057Homeodomain-like
SuperFamilySSF466891.05E-10260305IPR009057Homeodomain-like
PfamPF002493.6E-8263304IPR001005SANT/Myb domain
CDDcd001673.25E-7263304No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEFLDEESRP RFLFQSRAHP SSSSQSATSE SRKINKLLIC VTTSISILLV VLTFLFAANH  60
EPLTSILLWV AVSILIGPFA PGSVTGGDVR VGNGSVVEEP EPDPVETEVR KPKQHRGGSW  120
RQNEEQSRRS DAVVKVEKGD SASEAEAEKR DSFADEGSGS AAAVEEREWT EDDFELLKKQ  180
MVKNPVGKAR RWEVIAEAFQ GRHKVESVVK MAKSMAERRM GNGDSYAQFL KNRKPLDSRA  240
VESDNGGMVA EESKKEDGTN TGWSPGEDKA LLNALKAFPK DTTMRWEKIA AAVPGRSKKA  300
CMKRVADFAR DFRSSKAS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528771.11e-105transcription factor MAMYB
RefseqXP_015580605.11e-105transcription factor MAMYB
TrEMBLB9SS021e-103B9SS02_RICCO; DNA binding protein, putative
STRINGXP_002528771.11e-104(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.11e-62MYB_related family protein