PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0196s0028.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 253aa    MW: 27700.2 Da    PI: 8.9295
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0196s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26068.81.2e-2152151198
               DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqle 88 
                          aCaaCk++r++C ++ Cv+ pyfp +++++f  vh++FG+ +v kll+  ++   r+++++ l + +    + P+ G ++ + ++ ++ +
  Kalax.0196s0028.1.p  52 ACAACKHQRKRCHTNtCVFQPYFPGDKKEEFDTVHRFFGVIKVKKLLEGCEPGLpRQRMADELKWISVQLSKAPIAGPLAQFIAICSENQ 141
                          7***********9887**********************************99998******************************99999 PP

               DUF260  89 qlkaelallk 98 
                          ++ka +++l+
  Kalax.0196s0028.1.p 142 TKKAIISQLH 151
                          9998877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.98151154IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-1952148IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MTSSSPDVLG NEAESLRRGN GELRSGNNNA EVQGQLRSAE ALGQGNGEQR LACAACKHQR  60
KRCHTNTCVF QPYFPGDKKE EFDTVHRFFG VIKVKKLLEG CEPGLPRQRM ADELKWISVQ  120
LSKAPIAGPL AQFIAICSEN QTKKAIISQL HDYIQNLNGV LANRVAFCSN CGSAVEKQND  180
VAGQRLFPSQ SFTPDWTFNL YNNNVIAPHA GGLVSPRFAQ YRPQQMRQYG QSGQLSNIDQ  240
KTVGTAVSSD KG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.16e-21LOB domain-containing protein 2