PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0196s0081.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 280aa    MW: 31137.3 Da    PI: 9.0274
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0196s0081.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.7e-1361140155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...........................TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPk.as........................kapskKlsKaeiLekAveYIksLq 55 
                          r+r+hn+ Er RR++iN+ ++ Lr+llP                              p++++s  +++ +  +YI +Lq
  Kalax.0196s0081.1.p  61 RKRNHNASERERRKKINDLYSSLRSLLPAsEQsvliplnfvlsfqsvskfykfmfcDLPQGRMSIPTTVARILKYIPELQ 140
                          7999*************************5559***********************99******************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.22E-135988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.32E-76093No hitNo description
PROSITE profilePS5088813.14160139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-1461160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-1061140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-466145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-13117159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MLSVTSSSST SLFGWPSDEA VYGHRINQGF YDLEELAAAA NADHPGMPGG DQGGGEHGDS  60
RKRNHNASER ERRKKINDLY SSLRSLLPAS EQSVLIPLNF VLSFQSVSKF YKFMFCDLPQ  120
GRMSIPTTVA RILKYIPELQ GEVERLEKKK QAMSKKINKV RESVFSSSSS KLAGADQKVR  180
ETDEAKASIT KDNSNRSSIL TSKIGDRELV IQISTLRVSV SEILLSLEED GFQLINASSS  240
ESFSGRVFLN LHLQKVDVIR KMECEGLDEK LLSMLEKRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16074RKRNHNASERERRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-34bHLH family protein