PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0199s0022.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 403aa    MW: 44988.5 Da    PI: 6.0776
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0199s0022.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.62.1e-52161431128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtdeelv +yL++kv gk++++ ++i+e+diyk+ePwdLp  +k+k+++ ewyf+s  dkky +g r nrat++gyWkatg+
  Kalax.0199s0022.2.p  16 LAPGFRFHPTDEELVRYYLARKVCGKSCRI-DAISEADIYKMEPWDLPglSKMKSRDLEWYFYSALDKKYGNGARMNRATSKGYWKATGN 104
                          579***************************.99***************6448888999******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v++ ++ +vg+kktLvf+kgr p g++t+Wvmheyrl
  Kalax.0199s0022.2.p 105 DRSVKH-ESCTVGMKKTLVFHKGRPPGGKRTNWVMHEYRL 143
                          ******.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-629166IPR003441NAC domain
PROSITE profilePS5100556.23616166IPR003441NAC domain
PfamPF023657.1E-2718143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MICRENKPVS PPLPALAPGF RFHPTDEELV RYYLARKVCG KSCRIDAISE ADIYKMEPWD  60
LPGLSKMKSR DLEWYFYSAL DKKYGNGARM NRATSKGYWK ATGNDRSVKH ESCTVGMKKT  120
LVFHKGRPPG GKRTNWVMHE YRLVDAELER LGIVKDGYVL CRVFQKSGLG PPNGDQYASF  180
DESQWDDDKL VPGAETGDEG LMSDEAEPRD GSSLEGNGQD ENQDTQPEKT EDNLKERSFL  240
GAALVLKNER NDTWSLPSIV RPKRPRYTGS DSSCNPVQNH SSSLPSDPSL SAKLASPMAD  300
PADMAARTLL EFPLLNAHDA KENPQPTPSP SSSSRFDIAS FNMPVHPSYL DLISNLQNEI  360
HSVSAERENL RIEMMHAQAM IDVLQSRVNL LLQENEGLRR SA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-461516616165NO APICAL MERISTEM PROTEIN
1ut4_B4e-461516616165NO APICAL MERISTEM PROTEIN
1ut7_A4e-461516616165NO APICAL MERISTEM PROTEIN
1ut7_B4e-461516616165NO APICAL MERISTEM PROTEIN
3swm_A4e-461516619168NAC domain-containing protein 19
3swm_B4e-461516619168NAC domain-containing protein 19
3swm_C4e-461516619168NAC domain-containing protein 19
3swm_D4e-461516619168NAC domain-containing protein 19
3swp_A4e-461516619168NAC domain-containing protein 19
3swp_B4e-461516619168NAC domain-containing protein 19
3swp_C4e-461516619168NAC domain-containing protein 19
3swp_D4e-461516619168NAC domain-containing protein 19
4dul_A4e-461516616165NAC domain-containing protein 19
4dul_B4e-461516616165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619467.11e-134PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A0V0I6Z31e-132A0A0V0I6Z3_SOLCH; Putative NAC domain-containing protein 78-like
TrEMBLM1D2G11e-132M1D2G1_SOLTU; Uncharacterized protein
STRINGXP_009619467.11e-133(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.21e-103NAC domain containing protein 52