PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0199s0023.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 558aa MW: 62054.1 Da PI: 4.6114

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0199s0023.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.5	3.9e-51	11	137	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +pGfrFhPtdeelv++yLk+kv g+ +++ ++i+e+d+yk+ePwdLp k ++k+++ ewyfFs dkky +g+++nrat++gyWk+tgkd Kalax.0199s0023.1.p 11 APGFRFHPTDEELVKFYLKRKVCGRAFRF-DAIAEADVYKCEPWDLPdKsALKSRDLEWYFFSGLDKKYGHGSKTNRATERGYWKTTGKD 99 69***********************99.99**********96346667777***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v++ + +vg+kktLv++ grap+ge+t+Wvmheyrl Kalax.0199s0023.1.p 100 RPVHN-NLVVVGMKKTLVYHIGRAPRGERTNWVMHEYRL 137 9.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	56.092	10	160	IPR003441	NAC domain
SuperFamily	SSF101941	5.1E-60	10	160	IPR003441	NAC domain
Pfam	PF02365	5.1E-27	12	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence Send to blast
MGGRDPANFI APGFRFHPTD EELVKFYLKR KVCGRAFRFD AIAEADVYKC EPWDLPDKSA 60 LKSRDLEWYF FSGLDKKYGH GSKTNRATER GYWKTTGKDR PVHNNLVVVG MKKTLVYHIG 120 RAPRGERTNW VMHEYRLADS ELEKAGVSQA SFVLCRIFQK SGPGPKNGEQ HGAPFIEEEW 180 EDEDEVLVTG GEQSQDEALI ADGAYLETDD LDQLIDFNVS PGNYSLQTNY CYGGSSNQFE 240 VSRELSEEGQ KPSVGAHENL NQSKLPVTEQ QCFGELKPYE VEENPPMADY FAKPDDIASH 300 DVNYLLDEPY LNGNYDEVHR EGLYLETDDL LTPIEADPSS FDMLHEYLAD FDENDEIFYM 360 PPNNSKAEAE THIPLDIVNE QAEGQTQKLV MASKHLVNAH GGDDDGIASS NQNCTKFGSG 420 SKNPVAEHAK CLLESIPAPP AFAAEFPSKD AALRLASAMQ SQNSVNVVAN MMHPRNTSTA 480 NNGLSWSFDK NGKVQLIFSL SVGQGSGRLD PAACLDGYLS SKSKSATWRC WIYLTLFWVS 540 ILVISMKIGT CVVDAKQ*

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence Send to blast

MGGRDPANFI APGFRFHPTD EELVKFYLKR KVCGRAFRFD AIAEADVYKC EPWDLPDKSA  60
LKSRDLEWYF FSGLDKKYGH GSKTNRATER GYWKTTGKDR PVHNNLVVVG MKKTLVYHIG  120
RAPRGERTNW VMHEYRLADS ELEKAGVSQA SFVLCRIFQK SGPGPKNGEQ HGAPFIEEEW  180
EDEDEVLVTG GEQSQDEALI ADGAYLETDD LDQLIDFNVS PGNYSLQTNY CYGGSSNQFE  240
VSRELSEEGQ KPSVGAHENL NQSKLPVTEQ QCFGELKPYE VEENPPMADY FAKPDDIASH  300
DVNYLLDEPY LNGNYDEVHR EGLYLETDDL LTPIEADPSS FDMLHEYLAD FDENDEIFYM  360
PPNNSKAEAE THIPLDIVNE QAEGQTQKLV MASKHLVNAH GGDDDGIASS NQNCTKFGSG  420
SKNPVAEHAK CLLESIPAPP AFAAEFPSKD AALRLASAMQ SQNSVNVVAN MMHPRNTSTA  480
NNGLSWSFDK NGKVQLIFSL SVGQGSGRLD PAACLDGYLS SKSKSATWRC WIYLTLFWVS  540
ILVISMKIGT CVVDAKQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-45	10	160	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-45	10	160	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-45	10	160	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-45	10	160	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	8e-45	10	160	20	168	NAC domain-containing protein 19
3swm_B	8e-45	10	160	20	168	NAC domain-containing protein 19
3swm_C	8e-45	10	160	20	168	NAC domain-containing protein 19
3swm_D	8e-45	10	160	20	168	NAC domain-containing protein 19
3swp_A	8e-45	10	160	20	168	NAC domain-containing protein 19
3swp_B	8e-45	10	160	20	168	NAC domain-containing protein 19
3swp_C	8e-45	10	160	20	168	NAC domain-containing protein 19
3swp_D	8e-45	10	160	20	168	NAC domain-containing protein 19
4dul_A	7e-45	10	160	17	165	NAC domain-containing protein 19
4dul_B	7e-45	10	160	17	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011031618.1	0.0	PREDICTED: NAC domain-containing protein 78-like isoform X1
TrEMBL	A0A2I4KK98	1e-175	A0A2I4KK98_POPTR; NAC family protein
STRING	POPTR_0010s23650.1	1e-175	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	1e-121	NAC domain containing protein 2

Link Out ? help Back to Top
Phytozome	Kalax.0199s0023.1.p