PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0200s0022.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LSD
Protein Properties Length: 160aa    MW: 16285 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0200s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.41.1e-134266125
              zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                         C+gCr+lL YP+GA+sV+Ca+C++V
  Kalax.0200s0022.1.p 42 CSGCRNLLLYPAGATSVCCAVCNAV 66
                         ************************9 PP
2zf-LSD143.64.7e-1481105125
              zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                          CggC+tlL+Y rGA sV+C++C+tV
  Kalax.0200s0022.1.p  81 CGGCHTLLMYIRGAMSVQCSCCHTV 105
                          ************************9 PP
3zf-LSD141.72e-13119143125
              zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                          Cg+Cr lL+Y +GA+sV+Ca+C++V
  Kalax.0200s0022.1.p 119 CGNCRMLLMYQYGARSVKCAVCNFV 143
                          ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.107.3E-435140No hitNo description
TIGRFAMsTIGR010535.1E-133969IPR005735Zinc finger, LSD1-type
SuperFamilySSF486954.6E-542140IPR011031Multihaem cytochrome
PfamPF069437.0E-114266IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.6E-1478107IPR005735Zinc finger, LSD1-type
PfamPF069437.1E-1281105IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.6E-12116146IPR005735Zinc finger, LSD1-type
PfamPF069431.2E-12119143IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MPVPLAPYPS PPVSYTTPAP APQPLPTAAA AAANGSQGQL VCSGCRNLLL YPAGATSVCC  60
AVCNAVTAVP PPGTEMAQLI CGGCHTLLMY IRGAMSVQCS CCHTVNLALE ANQVAHVNCG  120
NCRMLLMYQY GARSVKCAVC NFVTSVGAST SAAEQKFNS*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075917.13e-91protein LOL1
RefseqXP_012075918.13e-91protein LOL1
RefseqXP_012075919.13e-91protein LOL1
SwissprotQ93ZB16e-78LOL1_ARATH; Protein LOL1
TrEMBLA0A067KEI26e-90A0A067KEI2_JATCU; Uncharacterized protein
STRINGcassava4.1_018557m4e-88(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.31e-65lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]