PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0200s0025.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 412aa    MW: 46444.3 Da    PI: 6.4453
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0200s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.72.2e-5361341128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeel+++yLk+kveg k+el evi+ +d+yk++Pw+Lp+   + + + ew+fF++rd+ky++g+r+nrat++gyWkatgk
  Kalax.0200s0025.1.p   6 LPPGFRFHPTDEELIDYYLKRKVEGLKIEL-EVIPVIDLYKYDPWELPElsFLPNMDMEWFFFCPRDRKYPHGSRTNRATRAGYWKATGK 94 
                          79****************************.99**************94345556788******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+++++++++lvg +ktLvfy+grap+g + dWvmheyrl
  Kalax.0200s0025.1.p  95 DRRIVCQSSSLVGYRKTLVFYQGRAPQGDRMDWVMHEYRL 134
                          **************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-575158IPR003441NAC domain
PROSITE profilePS5100557.7666159IPR003441NAC domain
PfamPF023656.9E-297134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MSGGSLPPGF RFHPTDEELI DYYLKRKVEG LKIELEVIPV IDLYKYDPWE LPELSFLPNM  60
DMEWFFFCPR DRKYPHGSRT NRATRAGYWK ATGKDRRIVC QSSSLVGYRK TLVFYQGRAP  120
QGDRMDWVMH EYRLSDDLPD TSGMPNAPGA FALCRVLKRS DKTYGSKNTV SGSRSRSMSS  180
TIVSNEPSHL STEESQPQTN YGSNGSNYST PNASPYSIAA PLAESSEPHH PNPSHFWVSP  240
DLILDSSSEH QQEGALWQHY PRNEDIVAPM TMWQPYGDIS PCTSFSNLNE GTSATGGVCG  300
TATNMSSPHP ENADYMSFWG NDDITFEDYS LLNNHNLPQV TICRKTPFFA NVNKLWERNQ  360
QIFLFMLQLV VEAFKIESAL LNLIPFISSG CAIMHHIIST NLVKKKLVIV V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-47515916165NO APICAL MERISTEM PROTEIN
1ut4_B2e-47515916165NO APICAL MERISTEM PROTEIN
1ut7_A2e-47515916165NO APICAL MERISTEM PROTEIN
1ut7_B2e-47515916165NO APICAL MERISTEM PROTEIN
4dul_A2e-47515916165NAC domain-containing protein 19
4dul_B2e-47515916165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280894.21e-124PREDICTED: NAC domain-containing protein 86
SwissprotO496973e-87NAC71_ARATH; NAC domain-containing protein 71
TrEMBLD7TTY91e-122D7TTY9_VITVI; Uncharacterized protein
STRINGVIT_02s0012g01040.t011e-123(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.14e-89NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]