PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0201s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 338aa    MW: 35429.6 Da    PI: 5.819
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0201s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015211233123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  Fs+   L  H+r+H
  Kalax.0201s0006.1.p 211 HECSICGSAFSSGQALGGHMRRH 233
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.5E-11134160IPR007087Zinc finger, C2H2
SuperFamilySSF576671.19E-9134157No hitNo description
PROSITE profilePS5015710.097135162IPR007087Zinc finger, C2H2
SMARTSM003550.3135157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280137158IPR007087Zinc finger, C2H2
SuperFamilySSF576671.19E-9206233No hitNo description
Gene3DG3DSA:3.30.160.605.7E-5209235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-11210235IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.949211238IPR007087Zinc finger, C2H2
SMARTSM003550.022211233IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280213233IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MESAEVESSA TEEFAAGASP QIAKRKRTKR RRIAVSSSSS GGGDNNKQGC VAVSEEEEEE  60
DRNYESTVTT ATEEEEDMAN CLILLARSGG DGGFGVVNRE DSVKTERKRK TTIGSRKSAE  120
ASSVAGVGGG GVGVYECRTC DKAFQSFQAL GGHRASHHKK AKVTATADVT PEEVKLVDQI  180
QLLSSFSPQP VIHLKPSSSS SSAAAHSSKV HECSICGSAF SSGQALGGHM RRHRGAVTND  240
NNQIAPAAAV AESSSHREEG IVVTERDMSS SNNNNNNFLS SLDLNLPAPA DEEDEQRRSS  300
YHEQFAGGQG NSNSSSTAAP ATAALVFSAP PLVGCYF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12832KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-28C2H2 family protein