PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0201s0021.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 240aa    MW: 26735.2 Da    PI: 4.8892
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0201s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.16.6e-164897255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ykGVr +  +g+WvAeIr p++   r r++lg++++  +Aa+a +aa  +l+g
  Kalax.0201s0021.1.p 48 LYKGVRKRN-WGKWVAEIRLPNS---RDRIWLGSYDSQVKAARAFDAAIYCLRG 97
                         59****887.**********933...5**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.06E-2647107No hitNo description
SuperFamilySSF541714.64E-1948107IPR016177DNA-binding domain
PROSITE profilePS5103220.77148105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-2748107IPR001471AP2/ERF domain
SMARTSM003801.5E-2948111IPR001471AP2/ERF domain
PRINTSPR003678.9E-84960IPR001471AP2/ERF domain
PfamPF008472.1E-94997IPR001471AP2/ERF domain
PRINTSPR003678.9E-87187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSLTILINVL IRILQLSIDN AAAAATSFES YCMAGGGGGG DSDSSSKLYK GVRKRNWGKW  60
VAEIRLPNSR DRIWLGSYDS QVKAARAFDA AIYCLRGSGA KFNFPHSPPD FRITRPLTNT  120
EIQEIAASYA NQEPRRSSGV EDVQQSTSSH FEELNFDHND SSNSSSSMWG GNEGQIDWPL  180
WNCLLDNVTD YRYPSPEYNS FLPYQSDQYN SFGHSGYESG SDEGYSQHNN LSLWNFQGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1438107474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324785.18e-46ethylene-responsive transcription factor ERF017
TrEMBLB9IKF62e-44B9IKF6_POPTR; Uncharacterized protein
STRINGPOPTR_0018s08320.13e-45(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-39ERF family protein