PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0203s0009.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 26191.8 Da    PI: 9.7607
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0203s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.75.5e-271059251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v++fsstgkly+++s
  Kalax.0203s0009.1.p 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMVFSSTGKLYDFAS 59
                         8***********************************************86 PP
2K-box85.98.2e-2978170898
                K-box   8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                          +  +++++ + +q+e++ L++++++Lq+++R+l+G+d++ L +k+Lq+Le+qLeksl++iR++K++ll+++i+el +k + +++en +L 
  Kalax.0203s0009.1.p  78 QlmNSSSEIKFWQREANLLRQQLQSLQETHRQLMGDDMSGLGIKDLQNLENQLEKSLRSIRTTKDQLLIDEIQELNRKGNIIHQENLELY 167
                          13468899*********************************************************************************9 PP

                K-box  96 kkl 98 
                          +k+
  Kalax.0203s0009.1.p 168 QKV 170
                          996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.3161IPR002100Transcription factor, MADS-box
CDDcd002651.14E-45278No hitNo description
SuperFamilySSF554558.89E-32291IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-283859IPR002100Transcription factor, MADS-box
PfamPF014863.9E-2783170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.8786176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGRGKVVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMVFSS TGKLYDFAST  60
SMKSVIDRYN KSKEDQHQLM NSSSEIKFWQ REANLLRQQL QSLQETHRQL MGDDMSGLGI  120
KDLQNLENQL EKSLRSIRTT KDQLLIDEIQ ELNRKGNIIH QENLELYQKV YVTRDAHQTN  180
GMNRTPVIRY DLDEAHVPVN LQLCQPQHQN YETPTRATNL GRLHLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-20182182MEF2C
5f28_B4e-20182182MEF2C
5f28_C4e-20182182MEF2C
5f28_D4e-20182182MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024168990.11e-122MADS-box transcription factor 23-like isoform X3
SwissprotQ6EP495e-98MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1U8PCJ81e-119A0A1U8PCJ8_GOSHI; MADS-box transcription factor 23-like isoform X5
STRINGXP_006472406.11e-115(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-99AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]