PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0204s0084.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 226aa    MW: 24413.5 Da    PI: 8.2011
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0204s0084.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.81.2e-40501491100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+l+r+C++ C++apyf +++p kfa vhk+FGasnv+k+l+++pee+r++++++lvyeAear++dPvyG++g i +lq++l++l
  Kalax.0204s0084.1.p  50 SCAACKLLKRRCSPTCIFAPYFRSDDPTKFAKVHKVFGASNVSKILSEVPEEQRQETVNTLVYEAEARLEDPVYGCIGAIAALQRKLAEL 139
                          6***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          + +la ++++
  Kalax.0204s0084.1.p 140 QRDLAIARAR 149
                          ****999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.59549150IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-4050147IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MYAKGRPRKG YGTKYTSTTT SLNHNITISS SSPRAMRNTS LHHEPRAASS CAACKLLKRR  60
CSPTCIFAPY FRSDDPTKFA KVHKVFGASN VSKILSEVPE EQRQETVNTL VYEAEARLED  120
PVYGCIGAIA ALQRKLAELQ RDLAIARARL AGYGTCLSNA SSSSGATGNW VDQQHLMDSM  180
SCFTQMNDGL GGDGYNSNAC VDIDQLIASA YGFEVGLSTA SFPFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-43451536114LOB family transfactor Ramosa2.1
5ly0_B3e-43451536114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023521654.16e-66LOB domain-containing protein 21-like isoform X1
RefseqXP_023521655.16e-66LOB domain-containing protein 21-like isoform X2
RefseqXP_023535900.16e-66LOB domain-containing protein 21-like
TrEMBLA0A059BI253e-64A0A059BI25_EUCGR; Uncharacterized protein
STRINGXP_010067552.16e-65(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.12e-63LOB domain-containing protein 21