PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0208s0016.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 918aa MW: 100935 Da PI: 6.7513

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0208s0016.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.9	4.2e-28	598	649	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+le+l+++Fs+++kdAAk+Lgvc+T+LKriCR+ GIkRWP+Rkik++ Kalax.0208s0016.1.p 598 AEKTITLEVLQRHFSGSLKDAAKSLGVCPTTLKRICRNQGIKRWPSRKIKKV 649 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.893	588	669	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-25	601	649	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.27E-23	817	907	No hit	No description
PROSITE profile	PS51745	24.337	820	903	IPR000270	PB1 domain
SMART	SM00666	3.4E-24	820	903	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.8E-22	821	900	No hit	No description
CDD	cd06407	1.64E-37	822	902	No hit	No description
Pfam	PF00564	2.7E-17	822	901	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 918 aa Download sequence Send to blast
MLRLGSNIIM DDGNLSPAAI HGPSFASDMD FDYMNELLGD GCWLETVQGS DFLPQCPSDS 60 NNLLNSPFHL WSPSDTFLGE NIFGQPEESS QERSSLPGGA SLVESQKGTS AKIQKPEQEL 120 GSLAGCSSQP SYRIDEAESG KRWWIGPRAT AGPKISVMER LVRAISYIKD SSKDRDVLIQ 180 IWVPMDLNGR RVLTTNDQPY IVDSSSSSLA SYRSISLNFQ FSAEKDSNMT EGMPGRVFLD 240 KVPEWTPDVR FFRSDEYARV GYAQTFNVRG TLALPVFERG SQTCLGVIEV VTTKQKVKAE 300 LDSVCQALQA VDLSSTESQS NDKAKKCIQS YHAALPEILE VMKSACLTHK LPLAQTWMPC 360 VQQGKEGCRH TIENYAHCVS TVDSACYVAD PNVQGFHEAC SEHHLLRGQG VAGKAFTTNE 420 PCFFDDITSF CKTEYPLSHH ARMFRLHAAV AIRLRSVHTG AADFVLEFFL PADCREPEDQ 480 KKMLASLSLI IKKTCNSLRV VTDDELVKDA ITSMSASVEG VGAPTTNNEM STRSGSVIGQ 540 SRNFAPFIQK EEPGEFNYGK FAVIQSNLPG SSSLDYNTFG EGNFKDFDRA GDKKRTKAEK 600 TITLEVLQRH FSGSLKDAAK SLGVCPTTLK RICRNQGIKR WPSRKIKKVG HSLEKLQRVI 660 DSVQGPSGTF QIGSFYSNFP ELASPSCKSG ITNQFSASKL STLPKSSTLQ LEGNASSPPT 720 TSLSPSSSCS QSSSSSHSCS SGRLDKTSSG NSTRSEDAAV KEKVDEGVLK RMRSDAQLNE 780 KGHDDPKLLP RSRSHVTLCR TPDIESLPLL QKIAVKESDG TRVKVTYGDD KIRIRMQNHW 840 QLQDLRQEIA RRFHVEGSSE MQLKYLDDDS EWVLLTCDAD WEECVDLCLS ASSNTIKLSL 900 HAPPHHLGSS LVSSSPP*

Sequence ? help Back to Top

Protein Sequence Length: 918 aa Download sequence Send to blast

MLRLGSNIIM DDGNLSPAAI HGPSFASDMD FDYMNELLGD GCWLETVQGS DFLPQCPSDS  60
NNLLNSPFHL WSPSDTFLGE NIFGQPEESS QERSSLPGGA SLVESQKGTS AKIQKPEQEL  120
GSLAGCSSQP SYRIDEAESG KRWWIGPRAT AGPKISVMER LVRAISYIKD SSKDRDVLIQ  180
IWVPMDLNGR RVLTTNDQPY IVDSSSSSLA SYRSISLNFQ FSAEKDSNMT EGMPGRVFLD  240
KVPEWTPDVR FFRSDEYARV GYAQTFNVRG TLALPVFERG SQTCLGVIEV VTTKQKVKAE  300
LDSVCQALQA VDLSSTESQS NDKAKKCIQS YHAALPEILE VMKSACLTHK LPLAQTWMPC  360
VQQGKEGCRH TIENYAHCVS TVDSACYVAD PNVQGFHEAC SEHHLLRGQG VAGKAFTTNE  420
PCFFDDITSF CKTEYPLSHH ARMFRLHAAV AIRLRSVHTG AADFVLEFFL PADCREPEDQ  480
KKMLASLSLI IKKTCNSLRV VTDDELVKDA ITSMSASVEG VGAPTTNNEM STRSGSVIGQ  540
SRNFAPFIQK EEPGEFNYGK FAVIQSNLPG SSSLDYNTFG EGNFKDFDRA GDKKRTKAEK  600
TITLEVLQRH FSGSLKDAAK SLGVCPTTLK RICRNQGIKR WPSRKIKKVG HSLEKLQRVI  660
DSVQGPSGTF QIGSFYSNFP ELASPSCKSG ITNQFSASKL STLPKSSTLQ LEGNASSPPT  720
TSLSPSSSCS QSSSSSHSCS SGRLDKTSSG NSTRSEDAAV KEKVDEGVLK RMRSDAQLNE  780
KGHDDPKLLP RSRSHVTLCR TPDIESLPLL QKIAVKESDG TRVKVTYGDD KIRIRMQNHW  840
QLQDLRQEIA RRFHVEGSSE MQLKYLDDDS EWVLLTCDAD WEECVDLCLS ASSNTIKLSL  900
HAPPHHLGSS LVSSSPP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010663967.1	0.0	PREDICTED: protein NLP4
Refseq	XP_010663969.1	0.0	PREDICTED: protein NLP4
TrEMBL	A0A438ETN8	0.0	A0A438ETN8_VITVI; Protein NLP2
STRING	evm.model.supercontig_26.186	0.0	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Kalax.0208s0016.1.p