PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0210s0045.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 128aa    MW: 14396.7 Da    PI: 8.502
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0210s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260106.22.7e-331102299
               DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk....alpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                          C+aCk+lr kC++dC+l+p fp+++p++f  vhk+FGa+n++k+l+    ++p + r +a++++++eA +r++dPvyG+vg+il+ qqq+
  Kalax.0210s0045.1.p   1 CSACKFLRGKCPADCILSPNFPSSNPQRFDPVHKIFGATNITKMLEiyrrQVPVHLRGQAAECMIFEAAMRTKDPVYGSVGIILQFQQQI 90 
                          *********************************************73333558889********************************** PP

               DUF260  88 eqlkaelallke 99 
                           q ++e+ +++ 
  Kalax.0210s0045.1.p  91 TQIQNEIIKIRG 102
                          *****9987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031958.2E-33199IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089121.3841104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
CSACKFLRGK CPADCILSPN FPSSNPQRFD PVHKIFGATN ITKMLEIYRR QVPVHLRGQA  60
AECMIFEAAM RTKDPVYGSV GIILQFQQQI TQIQNEIIKI RGEIALQSVQ QQHNQTQTTL  120
PIEQLNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-28112212128LOB family transfactor Ramosa2.1
5ly0_B4e-28112212128LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316444.37e-43LOB domain-containing protein 24
TrEMBLA0A2K1YZY89e-42A0A2K1YZY8_POPTR; Uncharacterized protein (Fragment)
STRINGXP_009333972.14e-40(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.13e-28LOB domain-containing protein 4