PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0210s0047.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 159aa    MW: 17291.6 Da    PI: 7.4688
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0210s0047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.11.7e-39101091100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk lrrkC++dC+l+pyfp+++p++fa vhk+FGa+n++k+l+++p + r ++++++++eA  r+rdPvyG+vg+i++lqqq+ q+
  Kalax.0210s0047.1.p  10 RCAACKCLRRKCPADCILSPYFPSSNPQRFASVHKVFGAANITKMLEQVPVHLRGQTAECMIFEAATRTRDPVYGSVGIISQLQQQITQV 99 
                          6***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          ++e+ +++ e
  Kalax.0210s0047.1.p 100 QNEIMKIQGE 109
                          ***9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.0189110IPR004883Lateral organ boundaries, LOB
PfamPF031954.4E-3910107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MSHHHSSSTR CAACKCLRRK CPADCILSPY FPSSNPQRFA SVHKVFGAAN ITKMLEQVPV  60
HLRGQTAECM IFEAATRTRD PVYGSVGIIS QLQQQITQVQ NEIMKIQGEI ALQSAQLQHN  120
QTQTTLRMEQ LSDQSGLEVG PDIGLGLNVD TGPSSGADA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-331111012111LOB family transfactor Ramosa2.1
5ly0_B2e-331111012111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023892506.14e-52LOB domain-containing protein 24-like
SwissprotP594685e-42LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A2K1YZY82e-50A0A2K1YZY8_POPTR; Uncharacterized protein (Fragment)
STRINGXP_010278070.14e-50(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.13e-28LOB domain-containing protein 24