PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0210s0073.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 329aa    MW: 36401.6 Da    PI: 7.9673
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0210s0073.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.4e-11132178455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++Er+RR+++ + +  L   +P +     kK +Ka++L  A++Y+k+Lq
  Kalax.0210s0073.1.p 132 DHIIAERKRREKLSQHIISLSAAVPGL-----KKKDKASVLAGAIKYLKQLQ 178
                          699************************.....89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.751128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-14132194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8132178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.34E-10133182No hitNo description
SuperFamilySSF474591.7E-14133193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-10134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
GMEDQSFINQ WMTNSHEDLS AVMLPMAAAT FSDSDLQHSM LYDYQQPPTK LLETTSWGSS  60
SVIEPAPDLQ TRNYHPATDV SAAAAASFLY PANPPQFPIG TQITDHHHQG EKGKVSITSD  120
AATTRISSGA QDHIIAERKR REKLSQHIIS LSAAVPGLKK KDKASVLAGA IKYLKQLQER  180
VKILEEQTKL NKTAQSVVVL GKAGLVVDDD SHKPLSGEMF MEVIPTEEQL PEIEARVCER  240
NVLLRIHSDR KKCVLEKTLR EMVKLRLTLV SSSVITFGSS ALDITITAQV DFRFRSKARS  300
TLINPAYLRI CCSHCTSSNL KHRLELIE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141ERKRRE
2137142RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018844450.11e-67PREDICTED: transcription factor bHLH25-like
TrEMBLA0A2I4GKM43e-66A0A2I4GKM4_JUGRE; transcription factor bHLH25-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-40bHLH family protein