PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0214s0033.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 233aa    MW: 25132.1 Da    PI: 4.7643
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0214s0033.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.2e-183888155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + y+GVr++   g+Wv+e+r+p   +k++r++lg+f t e+Aa+a++ a+++l+g
  Kalax.0214s0033.1.p 38 PVYRGVRRRN-AGKWVCELREP---NKKTRIWLGTFPTLEMAARAHDVAALALRG 88
                         68*****887.8*********8...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-143888IPR001471AP2/ERF domain
SMARTSM003801.2E-2839102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-313998IPR001471AP2/ERF domain
PROSITE profilePS5103222.3923996IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-213998IPR016177DNA-binding domain
CDDcd000183.19E-294098No hitNo description
PRINTSPR003671.5E-84051IPR001471AP2/ERF domain
PRINTSPR003671.5E-86278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDVSDLSNDH VSSHAPLLAS SNPKKRAGRK KFKETRHPVY RGVRRRNAGK WVCELREPNK  60
KTRIWLGTFP TLEMAARAHD VAALALRGSR ACLNFADSAW RLPVPESGDA EEIRRAAVEA  120
AEMFRPGTTS FNDGGGASTS SSSGSCGDDE FDEVMIGSNG DGGVSWSGSG GGMFEMEIED  180
FLGMSSWGLM VEMAEGLMMS PPPPPPPPPP YWEAVGGQEM DNDDVSLWSF SF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1337951271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858875.17e-74PREDICTED: dehydration-responsive element-binding protein 1C-like
SwissprotQ9FJ933e-64DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A022PVI82e-72A0A022PVI8_ERYGU; Uncharacterized protein
STRINGMigut.F01149.1.p3e-73(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.14e-45C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]