PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0216s0047.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Dof
Protein Properties Length: 373aa    MW: 41046.6 Da    PI: 9.2435
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0216s0047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.99.1e-3883142362
               zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                          e+al+cprC+s+ntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+  k+s
  Kalax.0216s0047.1.p  83 ETALRCPRCESSNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRATKRS 142
                          67899*************************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-3466137IPR003851Zinc finger, Dof-type
PfamPF027011.9E-3185140IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.86386140IPR003851Zinc finger, Dof-type
PROSITE patternPS01361088124IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MVFSSRPLYF DPPNQQYHHQ HQQQQQQQQQ QVSLFGAGNE ISNTSSLQHL PPQQPPVAPG  60
GSRTIRPGSM TDRARMAKVP LPETALRCPR CESSNTKFCY FNNYSLTQPR HFCKTCRRYW  120
TRGGALRNVP VGGGCRRATK RSSKKRLKSP AASGTDIATT TNSTDQAFGS SSSAGLNGNN  180
SMDGACHLPF YPKGMSHMGH EFEAHYTSGE SFGGARNDPH IAKLFQNDQQ WGRLAEATTG  240
SSAVTTTLLT QMHPPFPFMD NLAQQHQQEH SAIPSGLLYQ FNQQGLSGST LDSLRTCSNT  300
SMMNKSMMDP TAMTQFANIK MEDSNDKGLR RLLGLQTQAA ASNHMTSGDH QFNWLDNGTA  360
NAWTDLSGFY TP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.14e-44DNA binding with one finger 2.4