PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0217s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 291aa    MW: 32907.6 Da    PI: 8.5529
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0217s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-05123142120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++C+ C+k+F+r  +++ H+
  Kalax.0217s0001.1.p 123 FSCSVCSKTFNRYNDMQMHM 142
                          89*****************8 PP
2zf-C2H217.98.3e-06208230123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cgk F  k + ++H +++
  Kalax.0217s0001.1.p 208 FSCHKCGKAFAVKGDWRTHEKNC 230
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.99E-5119145No hitNo description
Gene3DG3DSA:3.30.160.601.9E-4123142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.201123150IPR007087Zinc finger, C2H2
SMARTSM003550.14123145IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
SuperFamilySSF576678.72E-7188228No hitNo description
Gene3DG3DSA:3.30.160.608.3E-6194228IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.829208228IPR007087Zinc finger, C2H2
SMARTSM0035536208228IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MQQLSSFTYK SPRSSNQSSY QHQEDTDFIQ LSLSPPGQQR LSKKQQQPHS HPPSTQTLKA  60
SNTFNSSHTD GSVDRDLHSG SHIERVNNAS DAMGKGSSHS GFTAKPPYWI PSPAQILVGP  120
TQFSCSVCSK TFNRYNDMQM HMWGHGSQYR KGPESLRGTK LTSTMLRVPC YCCIEDCRNN  180
INHLRPKPLK DFRTLQTHYK RKHGAKPFSC HKCGKAFAVK GDWRTHEKNC GKIWLCVCGS  240
DFKHKRSLKD HVRALGDCHG PQSLEFYDRA IHHEDAEDDE GEELDGHEDH *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007046299.21e-109PREDICTED: zinc finger protein WIP6
SwissprotQ9FX681e-102ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A061EB251e-108A0A061EB25_THECC; C2H2-like zinc finger protein
STRINGEOY021311e-108(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-101C2H2-like zinc finger protein