PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0217s0041.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SBP

Protein Properties

Length: 173aa MW: 19329.7 Da PI: 9.0199

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0217s0041.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	39	2.1e-12	128	168	2	42
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrf 42 Cq +g ++ ls++k+yh+rhkvC++hska+ v+v ++ rf Kalax.0217s0041.1.p 128 CQTKGFAVYLSNVKQYHQRHKVCQFHSKAAIVIVGVVTLRF 168 9*********************************9999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.7E-11	120	168	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	12.246	125	172	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.09E-10	126	168	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.2E-7	128	168	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MLEYELWQIP SLMTITSSGH DPPAVASHHD SHHFALPLDY AHQNAALRSS SNSNAFSYTP 60 PHYQNAAFYT SANPSFFLRR KRWVVSRGQD SGNLGRQTYF SMQDDDFVSR LYHHGGLGGG 120 ESMNAPGCQT KGFAVYLSNV KQYHQRHKVC QFHSKAAIVI VGVVTLRFLI EI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.2	1e-21	squamosa promoter binding protein-like 8

Link Out ? help Back to Top
Phytozome	Kalax.0217s0041.1.p