PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0217s0043.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 342aa    MW: 38583.2 Da    PI: 7.1657
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0217s0043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.94.3e-49121451128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhP+deel+v+yL++kv++++++   +i+++d+y ++PwdLp+k+  +e+ew+fFs+rd+ky++g r+nra++sgyWkatg+dk
  Kalax.0217s0043.1.p  12 LPPGFRFHPSDEELIVHYLQNKVNSRPVPG-CIIADIDLYMFNPWDLPSKALFGENEWFFFSPRDRKYPNGARPNRAAASGYWKATGTDK 100
                          79*************************999.78***************8777899*********************************** PP

                  NAM  91 evlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++       + e++g+kk Lvfy gr p+g+ktdW+m+eyrl
  Kalax.0217s0043.1.p 101 PIMRNnaasscgGVETIGVKKGLVFYVGRPPTGSKTDWIMNEYRL 145
                          ****866666655555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-5910174IPR003441NAC domain
PROSITE profilePS5100556.77612175IPR003441NAC domain
PfamPF023654.9E-2613145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDEKSTHLPI QLPPGFRFHP SDEELIVHYL QNKVNSRPVP GCIIADIDLY MFNPWDLPSK  60
ALFGENEWFF FSPRDRKYPN GARPNRAAAS GYWKATGTDK PIMRNNAASS CGGVETIGVK  120
KGLVFYVGRP PTGSKTDWIM NEYRLIGSIS KWGSNKRKGS SMRLDDWVLC RVRQRGSNSR  180
NVWDDPNGLT ANDRSASSFN TRKSEMQDFL TDTNHNLVGW PLLNSISATS QDDICSMTSS  240
LTHEEINNAM LSPNLKRKFA EDHLHDDCSF MPWPIKKIYS ASRDQKNEKE EIWSTSNSSH  300
NIAPAANWLT DANAPCQFYC LDDEWNIISE NCQALTGCSR S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-6431846173Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:20005003}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028776005.11e-91NAC domain-containing protein 2-like
SwissprotD2SMN42e-73NAMB1_HORVS; NAC transcription factor NAM-B1
TrEMBLA0A2P5YUN43e-87A0A2P5YUN4_GOSBA; Uncharacterized protein
STRINGERN052222e-87(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-75NAC domain containing protein 47
Publications ? help Back to Top
  1. Jamar C, et al.
    NAM-1gene polymorphism and grain protein content in Hordeum.
    J. Plant Physiol., 2010. 167(6): p. 497-501
    [PMID:20005003]