PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0218s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 314aa    MW: 33756.2 Da    PI: 10.046
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0218s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.28e-2291138249
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                          + e +snr vtfskR+ g++KKA+EL++LC+++ av++fs+ gk++ +
  Kalax.0218s0002.1.p  91 KMEKESNRLVTFSKRKSGLFKKANELCTLCGVRCAVVVFSQAGKVFSF 138
                          67899****************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.11982142IPR002100Transcription factor, MADS-box
SMARTSM004326.4E-3082141IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-2683153IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-1984104IPR002100Transcription factor, MADS-box
CDDcd002653.12E-3087154No hitNo description
PfamPF003194.9E-2391138IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-19104119IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-19119140IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MASLNAEKSD LAISTTTVTT TSSNDVLFNL GASVTVSSTI DAVIVTPSLA MPPPPVPIAP  60
STGSVPNSDV VSAISSGGKK SKGRGKIEMK KMEKESNRLV TFSKRKSGLF KKANELCTLC  120
GVRCAVVVFS QAGKVFSFGH PSVDLVVDRY LTGNLNPIAP QQAWNQEPQN LMEGRRRGPN  180
IENLNSELTN LVAALEASKK HSQELDDRRE ERLASCWWER PVQQMDGGQL DTLKRAMEDL  240
KSKVYHRAGF RWLPSTSSSS PATVPGFNYP CFRGAGPSTR PFSGLPSWNN DHRGPGEAAG  300
PSGNASGVWA RRI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028102693.15e-50agamous-like MADS-box protein AGL62
RefseqXP_028102723.15e-50agamous-like MADS-box protein AGL62
SwissprotQ9FKK22e-45AGL62_ARATH; Agamous-like MADS-box protein AGL62
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-43AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]