PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0218s0003.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

M-type_MADS

Protein Properties

Length: 231aa MW: 26340 Da PI: 5.7261

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0218s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71.7	6.5e-23	44	87	7	50
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +rqvtfskRr+g++KKA ELSvLC+ae+a+i++s+ gk y++ Kalax.0218s0003.1.p 44 DQRQVTFSKRRTGLFKKAGELSVLCGAEIAIIVVSEGGKPYTFG 87 58****************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	26.773	30	90	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.6E-32	30	89	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.32E-35	31	101	No hit	No description
SuperFamily	SSF55455	1.96E-28	31	100	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-20	32	52	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-23	39	86	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-20	52	67	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-20	67	88	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MVILAEEHHD HDKNNVRKNI VSDTVRKKSK GRQKIEIKKI LKPDQRQVTF SKRRTGLFKK 60 AGELSVLCGA EIAIIVVSEG GKPYTFGSPN VNQVLERYVK DGMSNGGAEM VSFKGLCSVE 120 QSKSMLPDEV YRVDQRDHDD KYKCFVEATR ELEEKRKGKR AAEMGGWTGA GDEGLYLWDE 180 CAESMCLEEL EEYLKAMQEM RARIVDHLEQ ISIKEETDAI WWHEIAQLED *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	4e-16	31	99	1	69	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	4e-16	31	99	1	69	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	4e-16	31	99	1	69	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	4e-16	31	99	1	69	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A	4e-16	31	99	1	69	Myocyte-specific enhancer factor 2A
3kov_B	4e-16	31	99	1	69	Myocyte-specific enhancer factor 2A
3kov_I	4e-16	31	99	1	69	Myocyte-specific enhancer factor 2A
3kov_J	4e-16	31	99	1	69	Myocyte-specific enhancer factor 2A
3p57_A	4e-16	31	99	1	69	Myocyte-specific enhancer factor 2A
3p57_B	4e-16	31	99	1	69	Myocyte-specific enhancer factor 2A
3p57_C	4e-16	31	99	1	69	Myocyte-specific enhancer factor 2A
3p57_D	4e-16	31	99	1	69	Myocyte-specific enhancer factor 2A
3p57_I	4e-16	31	99	1	69	Myocyte-specific enhancer factor 2A
3p57_J	4e-16	31	99	1	69	Myocyte-specific enhancer factor 2A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	1e-29	AGAMOUS-like 29

Link Out ? help Back to Top
Phytozome	Kalax.0218s0003.1.p