PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0219s0006.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 244aa MW: 27879.5 Da PI: 6.9492

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0219s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	127.4	1.1e-39	12	118	22	128
NAM 22 kvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy 109 k+++ ++el ++i+evd+yk+ePwdL k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v+s +++ +g+kktLv+y Kalax.0219s0006.1.p 12 KIHRLEIEL-DIIPEVDLYKCEPWDLAdKsFLPGRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVMS-HNRPIGMKKTLVYY 99 677777888.89************84334555778**********************************.999******* PP NAM 110 kgrapkgektdWvmheyrl 128 +grap+g +t Wvmheyrl Kalax.0219s0006.1.p 100 RGRAPHGIRTGWVMHEYRL 118 ***************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.77	1	150	IPR003441	NAC domain
SuperFamily	SSF101941	6.67E-46	4	147	IPR003441	NAC domain
Pfam	PF02365	1.1E-16	43	118	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MSPVGLPPGF RKIHRLEIEL DIIPEVDLYK CEPWDLADKS FLPGRDPEWY FFGPRDRKYP 60 NGFRTNRATR AGYWKSTGKD RRVMSHNRPI GMKKTLVYYR GRAPHGIRTG WVMHEYRLDE 120 NECEDSSGIQ LTNSMTISFS FKVLCRMHTH KIEQCRSTST LHLPNSKKAD EGLEILSADK 180 EVVMSPDMEM GMGSSSSYSR MDEVEELKKD NSWMEFITDG DPWFSSSNAA PIGGGEIATF 240 NHN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	8e-38	4	153	13	171	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011047785.1	4e-94	PREDICTED: NAC domain-containing protein 86 isoform X2
Swissprot	A4VCM0	2e-65	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A2P5CQG0	2e-91	A0A2P5CQG0_TREOI; NAC domain containing protein
STRING	XP_010037008.1	6e-92	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	3e-85	NAC domain containing protein 57

Link Out ? help Back to Top
Phytozome	Kalax.0219s0006.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]