PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0219s0008.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 311aa MW: 34543.7 Da PI: 8.3334

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0219s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.5	1.1e-31	219	272	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Kalax.0219s0008.1.p 219 PRMRWTNSLHASFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 272 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.79E-15	216	273	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.0E-28	217	273	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-23	219	272	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-6	220	271	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MPINSQRNTE MVAPDLDLHI CLPNMVASPS SLSSASLYCH EEPDTELSLL PNSSSEADNL 60 WSRQQQQQKP SSLNTLGLDE AAKNHNMQSL RFCPSFRSVR QAITANNTYQ QYVSDEGRNS 120 KLIKGIPVYN QSSSASSLYS NNPNFGGALR LNGMPMEAIR KQQPQFRYLR CSSSHQYSGI 180 TGQSSHSGIG VPEVNGDILF RPRFMLPKIQ DRRNNVRAPR MRWTNSLHAS FVHAVELLGG 240 HERATPKSVL ELMDVKDLTL AHVKSHLQMY RTVKSTDRSA ASSDGFGDEV FSRMEESIGS 300 ISGEREIAKE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	220	274	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	220	274	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-17	220	274	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	220	274	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	220	274	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	220	274	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	220	274	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	220	274	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	220	274	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	220	274	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	220	274	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	220	274	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006376702.2	1e-50	transcription repressor KAN1 isoform X2
Refseq	XP_011000707.1	3e-50	PREDICTED: transcription repressor KAN1-like
TrEMBL	A0A2K1Y8N8	1e-48	A0A2K1Y8N8_POPTR; Uncharacterized protein
STRING	POPTR_0012s03900.1	3e-50	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	1e-41	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kalax.0219s0008.1.p