PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0219s0017.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 253aa MW: 29129.9 Da PI: 5.2556

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0219s0017.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	149.2	2.1e-46	13	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtd+elv++yLk+k+++ ++el ++i+evd+yk+ePwdL + f rd+ky++g r+nrat++gyWk+tgkd+ Kalax.0219s0017.1.p 13 LPPGFRFHPTDQELVDYYLKRKIHRLEIEL-DIIPEVDLYKCEPWDLA--------DKSFLPGRDRKYPNGFRTNRATRAGYWKSTGKDR 93 79**************************.99**********6........235999************************ PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+s +++ +g+kktLv+y+grap+ +t Wvmheyrl Kalax.0219s0017.1.p 94 RVMS-QNRPIGMKKTLVYYRGRAPHVIRTGWVMHEYRL 130 .999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-56	8	153	IPR003441	NAC domain
PROSITE profile	PS51005	48.998	13	153	IPR003441	NAC domain
Pfam	PF02365	6.2E-25	14	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
LARLEKNMSP VGLPPGFRFH PTDQELVDYY LKRKIHRLEI ELDIIPEVDL YKCEPWDLAD 60 KSFLPGRDRK YPNGFRTNRA TRAGYWKSTG KDRRVMSQNR PIGMKKTLVY YRGRAPHVIR 120 TGWVMHEYRL DENECEDSSG IQDTYALCRV FKKSDELDHQ EQQGKRSLPS AAVMEGNDML 180 KVVMINCEQE VVMSPDMEMG MGSSSSYSRM DEVEELEKDN SWMEFITDGD PWFSSSNAAP 240 IGGEEIATFN NH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-45	8	153	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-45	8	153	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-45	8	153	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-45	8	153	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	9e-45	8	153	15	168	NAC domain-containing protein 19
3swm_B	9e-45	8	153	15	168	NAC domain-containing protein 19
3swm_C	9e-45	8	153	15	168	NAC domain-containing protein 19
3swm_D	9e-45	8	153	15	168	NAC domain-containing protein 19
3swp_A	9e-45	8	153	15	168	NAC domain-containing protein 19
3swp_B	9e-45	8	153	15	168	NAC domain-containing protein 19
3swp_C	9e-45	8	153	15	168	NAC domain-containing protein 19
3swp_D	9e-45	8	153	15	168	NAC domain-containing protein 19
4dul_A	8e-45	8	153	12	165	NAC domain-containing protein 19
4dul_B	8e-45	8	153	12	165	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011047785.1	1e-107	PREDICTED: NAC domain-containing protein 86 isoform X2
Refseq	XP_015883764.1	1e-107	NAC domain-containing protein 86
Swissprot	Q9FFI5	1e-77	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A371IGQ2	1e-106	A0A371IGQ2_MUCPR; NAC domain-containing protein 86 (Fragment)
STRING	XP_004515256.1	1e-106	(Cicer arietinum)
STRING	GLYMA09G29760.2	1e-106	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	6e-96	NAC domain containing protein 57

Link Out ? help Back to Top
Phytozome	Kalax.0219s0017.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]