PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0220s0020.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 333aa    MW: 37432.7 Da    PI: 7.0366
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0220s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.6e-35381292102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F++k+y+++ d++++ li w +++nsf+v+++ +f++++Lp yFkh+nf+SFvRQLn+YgFkkv+ ++         weF++++F +g+k
  Kalax.0220s0020.1.p  38 FIMKTYQMVTDPATDGLIAWGKSSNSFIVSNHLDFSQRILPAYFKHNNFSSFVRQLNTYGFKKVDPDR---------WEFANEWFLRGQK 118
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i r+++
  Kalax.0220s0020.1.p 119 HLLKNIVRRRH 129
                          *******9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-5134127IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.2E-3635127IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.8E-3335127IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.5E-183861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-2938127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-187688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-1889101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MKQIFGALPY TCVAERESQP GPNRSRPEMD ANSVIPPFIM KTYQMVTDPA TDGLIAWGKS  60
SNSFIVSNHL DFSQRILPAY FKHNNFSSFV RQLNTYGFKK VDPDRWEFAN EWFLRGQKHL  120
LKNIVRRRHG RSLSGPFQYA KDEEDEEEED ILLEISRLKE EQKSLEQQVK DMNRRLQATE  180
RRPQQMLSFI HKVVEDPELL SRIMLEKEKT YHADKARRLI KTASFSSSSS AAATASTNSV  240
KTEDDDEGGL GANSSPETIR WPSPSLPAWW NQDGNGFGSV HPGDGSGKPF ASAEDDRFGS  300
VRVGYVSSGS GADHVDGRSP PHYPFTLFRG GV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-252912711120Heat shock factor protein 1
5d5u_B1e-252112717129Heat shock factor protein 1
5d5v_B1e-252112717129Heat shock factor protein 1
5d5v_D1e-252112717129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313830.11e-102heat stress transcription factor C-1-like
SwissprotQ9LV522e-83HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A0M4GX431e-100A0A0M4GX43_GOSHI; HSF31
STRINGcassava4.1_010201m3e-98(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.14e-79heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]