PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0220s0060.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 1039aa    MW: 115065 Da    PI: 6.7692
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0220s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.5e-2387188199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F 
  Kalax.0220s0060.1.p  87 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHGNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLTGDSVLFI 174
                          99*****************************954.4444.48************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++++++l+++ +r+
  Kalax.0220s0060.1.p 175 --RDEKQQLLLGTRRA 188
                          ..55788889999886 PP
2Auxin_resp117.31.3e-38213296183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa+aa+++s+F+v+YnPr+s+seFv++++k+ ka++  ++s+GmRf+m fete+s +rr++Gt++g+sd+dpv+W+nS+Wr+L+
  Kalax.0220s0060.1.p 213 AANAAANNSIFTVFYNPRTSPSEFVIPLAKYYKAVNsYQISLGMRFRMTFETEESGTRRYMGTITGISDVDPVKWKNSQWRNLQ 296
                          799********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-3978202IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-4278214IPR015300DNA-binding pseudobarrel domain
CDDcd100179.37E-2186178No hitNo description
PROSITE profilePS5086312.37987189IPR003340B3 DNA binding domain
PfamPF023626.4E-2287188IPR003340B3 DNA binding domain
SMARTSM010193.4E-2387189IPR003340B3 DNA binding domain
PfamPF065072.1E-34213296IPR010525Auxin response factor
PROSITE profilePS5174528.1759261011IPR000270PB1 domain
PfamPF023091.5E-79261011IPR033389AUX/IAA domain
SuperFamilySSF542772.81E-89381005No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1039 aa     Download sequence    Send to blast
MLSLNLFTIC FQVAVSMKKD VDAQYPNYSN LPPKLICLLH SVTLLANPDT DEVYAQMVLQ  60
PVSSIDQEAL IGSDHSLKSH KPQTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFSM  120
QPPAQEIVAK DLHGNVWTFR HIYRGQPKRH LLTTGWSLFV SGKRLLTGDS VLFIRDEKQQ  180
LLLGTRRANR LPPNVSASVI SSDSMHIGIL AAAANAAANN SIFTVFYNPR TSPSEFVIPL  240
AKYYKAVNSY QISLGMRFRM TFETEESGTR RYMGTITGIS DVDPVKWKNS QWRNLQVGWD  300
EANTGEKCHR VSIWDIEPVT APYFICPPPF IRFKRPRQIG MPDEESSDMD NLFKRVMPWL  360
HDNAFLKESQ PIPGINFTQW MNMQQNHLLT HSLQSAYMPP IPGCVLPSLA DADPSQHVGL  420
LASHYPPQSN PQLGIQWPQH QLHQLPKPSP LNPCSTSHQH LPDLTQQSQN SVSQLPASSH  480
YMLPQTQVQS TDILQKQLAS QNVQAQGSIP QISNQQQLFS TSHNLGQLPE IVNQPVSNNP  540
IQLPMLQRGH QQEQQYLHSQ QSITQHVGQI ASFQGHQRLT ADVAHNTHIP ASIGSAQAVE  600
MPQAMTSSTY PCIIDPTQQQ CGNNTGLSTG CISSSPQQLR SVHQPLAVNI SEFPFPTGCH  660
TSNVNQVSVD GTTIWTGAGQ LLCANGVPSC STSTLNEKFP NAIKSVKGMI QKSYIQGPED  720
MTPPAFILPE TVAIESASSS NSFVRCSENK SAVLTELCNG KKQNAGIVNN FMIVNSVQPQ  780
KNYLDTSYSS TSVSQFENNA SLQQNVNPAS FSFQPMMSQT AVGFVDHRNN ISFEMSTGQN  840
IMPLNQDPLL SQDVVSLGKN KSPSEDMLHD FEYSKDPQQE LSSSIVSQSF GVPDMTFNSI  900
ESTLSDNSFI AKPPFAPPPQ PYQRLRTYTK VYKRGAVGRS IDITAYSGYD DLKQDLARRF  960
GIEGQLEDRH KVRWKLVYVD HENDVLLVGD DPWEEFVSCV RSIKILSPQE VQQMSLDGDV  1020
SNSVLLKQAC SSSNGGIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1351231783388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876353.10.0auxin response factor 19-like
TrEMBLA0A2N9GCT50.0A0A2N9GCT5_FAGSY; Auxin response factor
TrEMBLA0A2N9HN130.0A0A2N9HN13_FAGSY; Auxin response factor
STRINGXP_010106948.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20730.21e-170ARF family protein