PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0221s0005.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 347aa    MW: 38362.4 Da    PI: 8.1184
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0221s0005.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.63.4e-2853145286
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaesss 79 
                           g+kdrhsk++T +g+RdRR+Rls+++a++++dLq++LG+ ++sk i+WL+   k+ i++l+ +            +    s ++++++ 
  Kalax.0221s0005.3.p  53 SGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQERLGLSQPSKVIDWLIDSTKEDIDKLPPLqlpqgslgqflqQ----SIMSHSDQI 138
                          579*************************************************************4444444322220....222222222 PP

                  TCP  80 ssasnss 86 
                           +a n +
  Kalax.0221s0005.3.p 139 AAAPNRN 145
                          2222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.4E-2754206IPR005333Transcription factor, TCP
PROSITE profilePS5136928.69755113IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MTSSESRELV PAAKQEESAD LADNSRLGNA KTSSRQWSGF RNNPRIVRVS QSSGGKDRHS  60
KVCTVRGLRD RRIRLSVPTA IQLYDLQERL GLSQPSKVID WLIDSTKEDI DKLPPLQLPQ  120
GSLGQFLQQS IMSHSDQIAA APNRNSSFPL LFDTNTGMFA CKDNWININN NAHMQDPDMV  180
GERSKYWDYL DAASKAKSKE IERDNELINQ AEKGRWMETN SQHGNHFQGL KGYNNISQAS  240
AQNFFPVAGG SPLLGSNGTS VDNNPYNQSW DPSSTPSLAQ LGSRGISSMH QAHNVQNNCN  300
LLSSSSSAFD PRQINSLFHL LTSTSPIKSF QQNSANPKFH SQDVDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1860114155Putative transcription factor PCF6
5zkt_B4e-1860114155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010663449.14e-77PREDICTED: transcription factor TCP5
RefseqXP_019082201.14e-77PREDICTED: transcription factor TCP5
RefseqXP_019082202.14e-77PREDICTED: transcription factor TCP5
TrEMBLA0A438I3C81e-75A0A438I3C8_VITVI; Transcription factor TCP5
STRINGEOY220944e-75(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-38TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5