PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0222s0012.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 238aa MW: 27090.4 Da PI: 6.6268

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0222s0012.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	93.7	3e-29	12	89	52	128
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k + +ewyfFs rd+kyatg r+nrat+ gyWkatgkd++v++ ++e+ g++ktL+fy +rap+g kt W+mhe+r Kalax.0222s0012.2.p 12 KLNASEWYFFSFRDRKYATGYRTNRATTCGYWKATGKDRTVYDPdTSEVLGMRKTLIFYLNRAPNGIKTGWIMHEFRH 89 44668************************************9778889************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	38.087	1	108	IPR003441	NAC domain
SuperFamily	SSF101941	1.15E-37	7	108	IPR003441	NAC domain
Pfam	PF02365	1.5E-13	17	88	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MGGTMQIIET AKLNASEWYF FSFRDRKYAT GYRTNRATTC GYWKATGKDR TVYDPDTSEV 60 LGMRKTLIFY LNRAPNGIKT GWIMHEFRHE SPHTPPKEDW VLCRVFYKSK PEENTNTTSS 120 SPISPPSNTF QYNLKTSLSA STPNNATNNE IISMTPQNNN TFHKHNIVLP CEYQPQIMSL 180 NPNSLEQHII VLEPNQLAVA PISIAALAHT SDNDDGYDFL RFLWELKQDD NNAMDIV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-26	11	108	66	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-26	11	108	66	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-26	11	108	66	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-26	11	108	66	165	NO APICAL MERISTEM PROTEIN
3swm_A	4e-26	11	108	69	168	NAC domain-containing protein 19
3swm_B	4e-26	11	108	69	168	NAC domain-containing protein 19
3swm_C	4e-26	11	108	69	168	NAC domain-containing protein 19
3swm_D	4e-26	11	108	69	168	NAC domain-containing protein 19
3swp_A	4e-26	11	108	69	168	NAC domain-containing protein 19
3swp_B	4e-26	11	108	69	168	NAC domain-containing protein 19
3swp_C	4e-26	11	108	69	168	NAC domain-containing protein 19
3swp_D	4e-26	11	108	69	168	NAC domain-containing protein 19
4dul_A	4e-26	11	108	66	165	NAC domain-containing protein 19
4dul_B	4e-26	11	108	66	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021888562.1	3e-68	NAC domain-containing protein 21/22-like isoform X1
TrEMBL	A0A218L0V1	7e-67	A0A218L0V1_CARPA; NAC5 protein
STRING	evm.model.supercontig_165.12	1e-67	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	2e-57	NAC domain containing protein 74

Link Out ? help Back to Top
Phytozome	Kalax.0222s0012.2.p