PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0222s0033.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 255aa MW: 27510.7 Da PI: 6.6393

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0222s0033.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.8e-05	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Kalax.0222s0033.1.p 154 HQCSICGSEFSSGQALGGHMRRH 176 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	200	87	109	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	8.56E-6	88	109	No hit	No description
Pfam	PF13912	0.0017	88	102	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.56E-6	149	176	No hit	No description
Pfam	PF13912	1.6E-11	153	178	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.702	154	176	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0099	154	176	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	156	176	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MELPEHEAIA VAAPVHQEPL TLTIDRGKRA KRPSRVSSDE EEEDERRSYD SVVTEEEQDL 60 AHCLILLARA ELVRGGKRKV ADVGGCLECK ACNKTFPSFQ GLDGRRAGHG KPRSEINDCD 120 AEKQLSTSLQ LSTANSRNGN VSAVKASALS NRVHQCSICG SEFSSGQALG GHMRRHRAVP 180 APVRSPCTGV SSPATSMGEV KTLSVFSLDL NLPAPEESEI DHQRGVEDEQ NAAFFQQNTP 240 VFSAHAHALR GCHH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	3e-31	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0222s0033.1.p